View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_high_8 (Length: 392)
Name: NF2966_high_8
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 51805715 - 51805341
Alignment:
| Q |
1 |
catccatatcaaatataacaacactcattgatcttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805715 |
catccatatcaaatataacaacactcattgatcttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgca |
51805616 |
T |
|
| Q |
101 |
acagcttgaactttactataactacttccttgttggcagcatccctgaagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805615 |
acagcttgaactttactataactacttccttgttggcagcatccctgaagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaag |
51805516 |
T |
|
| Q |
201 |
ttaactggaacaatcccttcttctgtttgtaaacttccaaagcttcaggttctccaattctacaataacagtctcacaggtgaaattccaaaatcaattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805515 |
ttaactggaacaatcccttcttctgtttgtaaacttccaaagcttcaggttctccaattctacaataacagtctcacaggtgaaattccaaaatcaattg |
51805416 |
T |
|
| Q |
301 |
aaaactcaaaaacacttagaatattgtcactttacgacaatttcttaagtggacacgttcctgcgaaactaggac |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805415 |
aaaactcaaaaacacttagaatattgtcactttacgacaatttcttaagtggacacgttcctgcgaaactaggac |
51805341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 20017349 - 20017470
Alignment:
| Q |
1 |
catccatatcaaatataacaacactcattgatcttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgca |
100 |
Q |
| |
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||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||| || |||||||||| ||| ||||||||||||||||||||||| |
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| T |
20017349 |
catccatatcaaacataacaaccctcattgatcttgagctaagtgggaatttcctcgcaagtcaaattccttcagagcttggattgttgaaaaacttgca |
20017448 |
T |
|
| Q |
101 |
acagcttgaactttactataac |
122 |
Q |
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||||||||||| || ||||||| |
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| T |
20017449 |
acagcttgaacattgctataac |
20017470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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