View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966_low_1 (Length: 954)

Name: NF2966_low_1
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966_low_1
NF2966_low_1
[»] chr2 (10 HSPs)
chr2 (496-700)||(28216260-28216464)
chr2 (691-868)||(28216069-28216246)
chr2 (873-945)||(32806865-32806937)
chr2 (873-944)||(32309083-32309154)
chr2 (873-944)||(32565681-32565752)
chr2 (873-944)||(32815303-32815374)
chr2 (873-947)||(32799909-32799983)
chr2 (1-71)||(5589763-5589833)
chr2 (873-947)||(28215862-28215936)
chr2 (865-905)||(28216008-28216048)
[»] chr6 (1 HSPs)
chr6 (873-947)||(301237-301311)
[»] chr3 (2 HSPs)
chr3 (1-71)||(27405334-27405404)
chr3 (697-738)||(26774263-26774304)
[»] chr5 (1 HSPs)
chr5 (3-70)||(38919751-38919818)
[»] chr8 (1 HSPs)
chr8 (102-186)||(18808758-18808843)
[»] chr4 (3 HSPs)
chr4 (107-186)||(51291115-51291195)
chr4 (621-667)||(17134314-17134360)
chr4 (697-735)||(21453239-21453277)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 496 - 700
Target Start/End: Complemental strand, 28216464 - 28216260
Alignment:
Q  496 atggtgtaaatggttggttacaaccattacaacttgacagcatcaattttagttgttacatcttaagtttaaagtttattatgatgcacgaaattaggag 595  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28216464 atggtgtaaatggttggctacaaccattacaacttgacagcatcaattttagttgttacatcttaagtttaaagtttattatgatgcacgaaattaggag 28216365  T
Q  596 tccttgggattataaatatgtttacaatcttagcatttggtaccacattacatactagaaaactcctatattattcttatcatttcatttaagtatttta 695  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  28216364 tccttaggattataaatatgtttacaatcttagcatttggtaccacattacatactagaaaactcctatattattcttattatttcattaaagtatttta 28216265  T
Q  696 gtttt 700  Q
    |||||    
T  28216264 gtttt 28216260  T

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Target: chr2; HSP #2
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 691 - 868
Target Start/End: Complemental strand, 28216246 - 28216069
Alignment:
Q  691 ttttagttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt 790  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28216246 ttttatttttcattaggtagctcatccttatgatgagtgagtagttcccctagaacatggaaagtatatgacaagttttccataagtgaagaattggagt 28216147  T
Q  791 ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatcttacggtta 868  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28216146 ttaaattttaataatgagaaaaaagatgcatatgtttagaagataaataatcccttaaagagattaatctcacggtta 28216069  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 873 - 945
Target Start/End: Complemental strand, 32806937 - 32806865
Alignment:
Q  873 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtatcccttcccgttcttc 945  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  32806937 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttc 32806865  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 873 - 944
Target Start/End: Original strand, 32309083 - 32309154
Alignment:
Q  873 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtatcccttcccgttctt 944  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  32309083 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttctt 32309154  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 873 - 944
Target Start/End: Complemental strand, 32565752 - 32565681
Alignment:
Q  873 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtatcccttcccgttctt 944  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  32565752 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttctt 32565681  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 873 - 944
Target Start/End: Complemental strand, 32815374 - 32815303
Alignment:
Q  873 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtatcccttcccgttctt 944  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  32815374 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttctt 32815303  T

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Target: chr2; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 873 - 947
Target Start/End: Complemental strand, 32799983 - 32799909
Alignment:
Q  873 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtatcccttcccgttcttctc 947  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  32799983 aagaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctc 32799909  T

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Target: chr2; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 5589833 - 5589763
Alignment:
Q  1 tctaactacaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttcca 71  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  5589833 tctaactacaacttacaactcattcgtgcaatggtgaagaaattttatgtcgtgcgttttagctttttcca 5589763  T

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Target: chr2; HSP #9
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 873 - 947
Target Start/End: Complemental strand, 28215936 - 28215862
Alignment:
Q  873 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtatcccttcccgttcttctc 947  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |  |||||| |||||||||    
T  28215936 aagaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctc 28215862  T

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Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 865 - 905
Target Start/End: Complemental strand, 28216048 - 28216008
Alignment:
Q  865 gttataaaaagaaaatgaggagattcttcatcttcaaccca 905  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28216048 gttataaaaagaaaatgaggagattcttcatcttcaaccca 28216008  T

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Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 873 - 947
Target Start/End: Original strand, 301237 - 301311
Alignment:
Q  873 aagaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtatcccttcccgttcttctc 947  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  301237 aagaaaatgagaagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctc 301311  T

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Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27405334 - 27405404
Alignment:
Q  1 tctaactacaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttcca 71  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||    
T  27405334 tctaactacaacatacaactcattcgtgcaatggtgacgaaattttatgtcgtgtgttttagctttttcca 27405404  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 738
Target Start/End: Original strand, 26774263 - 26774304
Alignment:
Q  697 ttttcattaggtagctcatccttatgatgagtgagtagttcc 738  Q
    |||||| || |||| |||||||||||||||||||||||||||    
T  26774263 ttttcactacgtagttcatccttatgatgagtgagtagttcc 26774304  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 38919751 - 38919818
Alignment:
Q  3 taactacaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttcc 70  Q
    ||||||| |||||||| ||||||||||||||||||| |||||||||||| ||| ||||| ||||||||    
T  38919751 taactactacatacaattcattcgtgcaatggtgacgaaattttatgtcgtgcattttatctttttcc 38919818  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Original strand, 18808758 - 18808843
Alignment:
Q  102 tgctttttaagcacttaaagtggtaacattataggaaagtt-atgcatttattgcattaggtattgaaatctttaattattttaaa 186  Q
    |||| ||||||||| |||| |||||| ||| || ||||||| ||||||||||||||||||  |||||| |||||| || |||||||    
T  18808758 tgctctttaagcacctaaaatggtaagattttatgaaagtttatgcatttattgcattagaaattgaagtctttactttttttaaa 18808843  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 51291195 - 51291115
Alignment:
Q  107 tttaagcacttaaagtggtaacattataggaaagtta-tgcatttattgcattaggtattgaaatctttaattattttaaa 186  Q
    ||||||||| |||| |||||| ||| || |||||||  ||||||||||||||| |  |||||| |||||||||||||||||    
T  51291195 tttaagcacctaaaatggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtctttaattattttaaa 51291115  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 621 - 667
Target Start/End: Original strand, 17134314 - 17134360
Alignment:
Q  621 aatcttagcatttggtaccacattacatactagaaaactcctatatt 667  Q
    ||||||||||||||  ||||||||||||| |||||||||| ||||||    
T  17134314 aatcttagcatttgacaccacattacatattagaaaactcttatatt 17134360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 697 - 735
Target Start/End: Original strand, 21453239 - 21453277
Alignment:
Q  697 ttttcattaggtagctcatccttatgatgagtgagtagt 735  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  21453239 ttttcattgggtagctcatccttgtgatgagtgagtagt 21453277  T

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