View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_low_10 (Length: 377)
Name: NF2966_low_10
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 9380859 - 9381219
Alignment:
| Q |
1 |
caaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtcaaaagcc |
100 |
Q |
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| T |
9380859 |
caaaaagttaccatggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtcaaaagcc |
9380958 |
T |
|
| Q |
101 |
ttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgatgccacag |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9380959 |
ttagaattcttaaaagatgttccatacttagcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgatgccacag |
9381058 |
T |
|
| Q |
201 |
ccacacttcttgttccacttatgtatcacatagccataaatatgcatgttcatccacttcttcttatgatccctggtggtatagcaactgagtttgcatt |
300 |
Q |
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| T |
9381059 |
ccacacttcttgttccacttttgtatcacatagccataaatatgcatgttcatccacttcttcttatgatccctggtggtatagcaactgagtttgcatt |
9381158 |
T |
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| Q |
301 |
ctggcttccaacatcaacaccttcaaatgttgttggatttgccactggacatattgaaatt |
361 |
Q |
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| T |
9381159 |
ctggcttccaacatcaacaccttcaaatgttgttggatttgccactggacatattgaaatt |
9381219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 55738880 - 55739232
Alignment:
| Q |
9 |
taccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtcaaaagccttagaatt |
108 |
Q |
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| T |
55738880 |
taccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttctaaagctttagattt |
55738979 |
T |
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| Q |
109 |
cttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgatgccacagccacactt |
208 |
Q |
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|||| |||||| ||||| |||||||||| |||||| |||||||| || |||| ||||| ||||||||||||||||| ||||||||||| || |||||| |
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| T |
55738980 |
cttagaagatgccccatatttggcaattgctcctgcagttagtcttataagtagtattattactgaattcatcacttctaatgatgccactgctacactt |
55739079 |
T |
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| Q |
209 |
cttgttccacttatgtatcacatagccataaatatgcatgttcatccacttcttcttatgatccctggtggtatagcaactgagtttgcattctggcttc |
308 |
Q |
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| T |
55739080 |
attattccacttctatatcatatagctaggactatgcatgtacatcctcttcttcttatgatcccaggagcaattgctactgaatttgctttcttgcttc |
55739179 |
T |
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| Q |
309 |
caacatcaacaccttcaaatgttgttggatttgccactggacatattgaaatt |
361 |
Q |
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| || ||||| || |||||||| ||||| ||||| ||||| || ||||||||| |
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| T |
55739180 |
ctacgtcaactccctcaaatgtagttggttttgctactggtcacattgaaatt |
55739232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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