View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_low_11 (Length: 374)
Name: NF2966_low_11
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 48416649 - 48416917
Alignment:
| Q |
9 |
agcatagggactcgagaatgtgtgctgcaataccacatccaaaacaacatggggactccaaaatttgtgctgcatattatagaataaaaatcttagctca |
108 |
Q |
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| T |
48416649 |
agcatagggactcgagaatgtgtgctgcaatatcacatccaaaacaacacggggactccaaaatttgtgctgcatattatagaataaaaatcttagctca |
48416748 |
T |
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| Q |
109 |
atgtccaaacatagacttggccccggctagctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtgggct |
208 |
Q |
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| T |
48416749 |
atgtccaaacatagacttggccccagctagctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtgggct |
48416848 |
T |
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| Q |
209 |
ttctagagtcatcacggttgccttttgaactgcagagacaacatcaactcctcttttctcactccccat |
277 |
Q |
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| T |
48416849 |
ttctagagtcatcacggttgccttttgaactgcagagacaacatcaactcctcttttctcactccccat |
48416917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 48421897 - 48422117
Alignment:
| Q |
9 |
agcatagggactcgagaatgtgtgctgcaataccacatccaaaacaacatggggactccaa-aatttgtgctgcatattatagaataaaaatcttagctc |
107 |
Q |
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| T |
48421897 |
agcatggggagtcgagaatttgtgctgcaataccacatccaaaacagtacggggactcagagaatttgtgttgcatattatagaataaaaatcttagctc |
48421996 |
T |
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| Q |
108 |
aatgtccaaacatagacttggccccggctag---ctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggaattgcagatatgagtg |
204 |
Q |
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| T |
48421997 |
aatgtccaaacatagacctggcctccgctactacctcctgctaacatcccaacctcataagagtgtgcatcaaatttaagtggatttgcagatatgggtg |
48422096 |
T |
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| Q |
205 |
ggctttctagagtcatcacgg |
225 |
Q |
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| T |
48422097 |
gactctctagagtcatcacgg |
48422117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 272 - 358
Target Start/End: Original strand, 48416940 - 48417026
Alignment:
| Q |
272 |
ccccatattgccctgttaccataaaatcaagataacaaatgtcaactgcttttgtcatgaatcaaataaattcctttttaacatatg |
358 |
Q |
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| T |
48416940 |
ccccatattgccctgttaccataaaatcaagataacaaatgtcaactgcttttgtcatgaatcaaataaattcctttttaacatatg |
48417026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 266
Target Start/End: Original strand, 48410398 - 48410581
Alignment:
| Q |
86 |
tatagaataaaaatcttagctcaatgtccaaacatagacttggccccggct---agctcctgctaacatcccaacctcataagagtgtgcatcaaattta |
182 |
Q |
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|||||||||||| |||||||| ||||||| | |||||| ||||| | || ||||||||||| ||||||||||||| |||||| |||||||||| | |
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| T |
48410398 |
tatagaataaaattcttagcttgatgtccagatatagacctggcctccacttgtagctcctgctagcatcccaacctcacaagagtttgcatcaaatctg |
48410497 |
T |
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| Q |
183 |
agtggaattgcagatatgagtgggctttctagagtcatcacggttgccttttgaactgcagagacaacatcaactcctcttttc |
266 |
Q |
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|||||||||||||||| ||||||| | ||| ||| | | |||||| ||||||||| |||||||| ||||||||||||||| |
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| T |
48410498 |
catggaattgcagatatgtgtgggctctgtagtgtctttattgttgccctttgaactgtggagacaacgtcaactcctcttttc |
48410581 |
T |
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