View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_low_12 (Length: 370)
Name: NF2966_low_12
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 154 - 362
Target Start/End: Original strand, 32515946 - 32516154
Alignment:
| Q |
154 |
aagtatttctgaagctggtactgataaacaaaccattaggagagctcttcacatctagttagcatttagtgagaatctcaactcaataataacactaata |
253 |
Q |
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| T |
32515946 |
aagtatttctgaagctggtactgatgaacaaaccattaggagagctcttcacatctagttagcatttagtgagaatctcaactcaataataacactaata |
32516045 |
T |
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| Q |
254 |
atgcagtaaccaataaaccaacaacgttgttaattacataatgtcaacttccaaaataattgaggttcaatgattttgcatcctttctgttcatcatata |
353 |
Q |
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| T |
32516046 |
atgcagtaaccaataaaccaacaacgttgttaattacataatgtcaacttccaaaataattgaggttcaatgattttgcatcctttctgttcatcatata |
32516145 |
T |
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| Q |
354 |
agtattatc |
362 |
Q |
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||||||||| |
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| T |
32516146 |
agtattatc |
32516154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 32515830 - 32515913
Alignment:
| Q |
17 |
aatatctaagcgtctttaagatgtaacatcaagtggctctaataattacacacaaatagtcctaaaatcatgcattgaagacgc |
100 |
Q |
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| T |
32515830 |
aatatctaagcgtctttaagatgtaacatcaagtggctctaataattacacacaaatagtcctaaaatcatgcattgaagacgc |
32515913 |
T |
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