View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2966_low_15 (Length: 324)
Name: NF2966_low_15
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 14769224 - 14768923
Alignment:
| Q |
8 |
gttcaaattccttttatttaattcttccatataannnnnnnnnactaattttgaataatacaatgaatgaaaccataatacaaaaccaaacttcgtatca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14769224 |
gttcaaattccttttatttaattcttccatataaattttttt-actaattttgaataatacaatgaatgaaaccataatacaaaaccaaacttcgtatca |
14769126 |
T |
|
| Q |
108 |
tataagtacgacgcgctgaaaccattcaactaaaccaacgttcttcttcactaccaaaccaaacagaaaaattgctaccattttctctcaactcaaaagc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14769125 |
tataagtacgacgcgctgaaaccattcaactaaaccaacgttcttcttcactaccaaaccaaacagaaaaattgctgccattttctctcaactcaaaagc |
14769026 |
T |
|
| Q |
208 |
ttcatttcaaccttataatcactttctcggtaacttctctagcttttcttgttattaatct-tcatttctcttcaatttgatgtttttattaatggaatt |
306 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14769025 |
ttcatttcaacctcataatcgctttctcggtaacttctctagcttttcttgttgttaatctctcatttctcttcaatttgatgttttttttaatggaatt |
14768926 |
T |
|
| Q |
307 |
aat |
309 |
Q |
| |
|
||| |
|
|
| T |
14768925 |
aat |
14768923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 15219675 - 15219374
Alignment:
| Q |
8 |
gttcaaattccttttatttaattcttccatataannnnnnnnnactaattttgaataatacaatgaatgaaaccataatacaaaaccaaacttcgtatca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15219675 |
gttcaaattccttttatttaattcttccatataaattttttt-actaattttgaataatacaatgaatgaaaccataatacaaaaccaaacttcgtatca |
15219577 |
T |
|
| Q |
108 |
tataagtacgacgcgctgaaaccattcaactaaaccaacgttcttcttcactaccaaaccaaacagaaaaattgctaccattttctctcaactcaaaagc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
15219576 |
tataagtacgacgcgctgaaaccattcaactaaaccaacgttcttcttcactaccaaaccaaacagaaaaattgctgccattttctctcaactcaaaagc |
15219477 |
T |
|
| Q |
208 |
ttcatttcaaccttataatcactttctcggtaacttctctagcttttcttgttattaatct-tcatttctcttcaatttgatgtttttattaatggaatt |
306 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15219476 |
ttcatttcaacctcataatcgctttctcggtaacttctctagcttttcttgttgttaatctctcatttctcttcaatttgatgttttttttaatggaatt |
15219377 |
T |
|
| Q |
307 |
aat |
309 |
Q |
| |
|
||| |
|
|
| T |
15219376 |
aat |
15219374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 17559428 - 17559687
Alignment:
| Q |
56 |
ttttgaataatacaatgaatgaaaccataatacaaaaccaaacttcgtatcatataag-----tacgacgcgctgaaaccattcaactaaacc-aacgtt |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17559428 |
ttttgaataatacaatgaatgaaaccataatacaaaaccaaacttcgtatcatataatataaatacgacgcgctgaaaccattcaactaaacccaacgtt |
17559527 |
T |
|
| Q |
150 |
cttcttcactaccaaaccaaacagaaaaattgctaccattttctctcaactcaaaagcttcatttcaaccttataatcactttctcggtaacttctctag |
249 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17559528 |
cttcttcactaccaaaccaaaaacaaaa-ttgctaccattttctctcaactcaaaagcttcatttcaacctcataatcactttctcggtaacttctctag |
17559626 |
T |
|
| Q |
250 |
cttttcttgttattaatct-tcatttctcttcaatttgatgtttttattaatggaattaat |
309 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17559627 |
cttttcttgttattaatctctcatttctcttcaatttgatgttttttttaatggaattaat |
17559687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 17559349 - 17559382
Alignment:
| Q |
8 |
gttcaaattccttttatttaattcttccatataa |
41 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17559349 |
gttcaaattccttttatttaattcttccatataa |
17559382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University