View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2966_low_16 (Length: 313)
Name: NF2966_low_16
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_16 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 13858235 - 13858002
Alignment:
| Q |
14 |
gagataacatctcaagaatcagtccaattagatgatataaattgaaaaccatccacttgaatcataaaggtaacacttgagataaatatgtttggttaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13858235 |
gagataacatctcaagaatcagtccacttagatgatataaattgaaaaccatccacttgaatcataaaggtaacacttgagataaatatgtttggttaat |
13858136 |
T |
|
| Q |
114 |
atatagtattagttactgtcaaatgtattgaatccctttctaagccaattcacttcatttcatgtctttttgttttgcagggcccataccatatgaatga |
213 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13858135 |
atatagtattagttactgtcaaatatcttgaatccctttctaagccaattcacttcaattcatgtctttttgttttgcagggcccataccatatgaatga |
13858036 |
T |
|
| Q |
214 |
tcaaacataattcataaagtcagagatcaatttg |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
13858035 |
tcaaacataattcataaagtcagagatcaatttg |
13858002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 5937212 - 5937450
Alignment:
| Q |
14 |
gagataacatctcaagaatcagtccaattagatgatataaattgaaaaccatccacttgaatcataaaggtaacacttgagataaatatgtttggttaat |
113 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5937212 |
gagattacatctcaagaatcagtccacttagatgatataaattgaaaaccatccacttgaatcataaaggtaacacttgagataaatatgtttggttaat |
5937311 |
T |
|
| Q |
114 |
atatagtattagttactgtcaaatgtattgaatccctttctaagccaattcacttcatttcatgtctttttgttttgcagggcccataccatatgaatga |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||| |||||||||||||| || |||| ||||||||||||||| |
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|
| T |
5937312 |
atatagtattagttactgtcaaatgtcttgaatccctttctatgtcaattcacttcaattcttgtctttttgttttacaaggccaataccatatgaatga |
5937411 |
T |
|
| Q |
214 |
tcaaacataattcataaagtcagagatcaatttggactg |
252 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5937412 |
tcaaacataattcataaagccagagatcaatttggactg |
5937450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 5932224 - 5931986
Alignment:
| Q |
14 |
gagataacatctcaagaatcagtccaattagatgatataaattgaaaaccatccacttgaatcataaaggtaacacttgagataaatatgtttggttaat |
113 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
5932224 |
gagattacatctcaagaatcagtccacttagatgatataaattgaaaaccatccacttgaatcataatggtaacacttgagataaatatgtttggttaat |
5932125 |
T |
|
| Q |
114 |
atatagtattagttactgtcaaatgt-attgaatccctttctaagccaattcacttcatttcatgtctttttgttttgcagggcccataccatatgaatg |
212 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||| | |||||||||||||| |
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|
| T |
5932124 |
atatagtattagttattgtcaaatgtctttgaatccctttctaattcaattcacttcaattcatgtctttttgttatgcagggtcaataccatatgaatg |
5932025 |
T |
|
| Q |
213 |
atcaaacataattcataaagtcagagatcaatttggact |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5932024 |
atcaaacataattcataaagtcagagatcaatttggact |
5931986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 4317211 - 4317257
Alignment:
| Q |
251 |
tgttcccacacactagaccgcttgttactagtgttactagtagattg |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4317211 |
tgttcccacacactagaccgcttgttactagtgttaccagtagattg |
4317257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 17304193 - 17304431
Alignment:
| Q |
14 |
gagataacatctcaagaatcagtccaattagatgatataaattgaaaaccatccacttgaatcataaaggtaa-cacttgagataaatatgtttggttaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17304193 |
gagataacatctcaagaatcagtccacttagatgatataaattgaaaagcatccacttgaatcataaaggtaaacacttgagataaatatgtttggttaa |
17304292 |
T |
|
| Q |
113 |
tatatagtattagttactgtcaaatgtattgaatccctttctaagccaattcacttcatttcatgtctttttgttttgcagggcccataccatatgaatg |
212 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17304293 |
tatacagtattagttactgtcaaatgtcttgaatccctttctaagccaattcacttcatttcatgtctttttgttttgcagggcccataccatatgaatg |
17304392 |
T |
|
| Q |
213 |
atcaaacataattcataaagtcagagatcaatttggact |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17304393 |
atcaaacataattcataaagtcagagatcaatttggact |
17304431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 141 - 251
Target Start/End: Original strand, 34588018 - 34588128
Alignment:
| Q |
141 |
ttgaatccctttctaagccaattcacttcatttcatgtctttttgttttgcagggcccataccatatgaatgatcaaacataattcataaagtcagagat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34588018 |
ttgaatccctttctaagccaattcacttcaattcatgtctttttgttttgcagggcccataccatatgaatgatcaaacataattcataaagtcagagat |
34588117 |
T |
|
| Q |
241 |
caatttggact |
251 |
Q |
| |
|
||||||||||| |
|
|
| T |
34588118 |
caatttggact |
34588128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 115 - 251
Target Start/End: Complemental strand, 27857467 - 27857331
Alignment:
| Q |
115 |
tatagtattagttactgtcaaatgtattgaatccctttctaagccaattcacttcatttcatgtctttttgttttgcagggcccataccatatgaatgat |
214 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27857467 |
tatagtattagttactgtcaaatgtcttgaatccctttctaagccaattcacttcaattcatgtctttttgttttgcagggccaataccatatgaatgat |
27857368 |
T |
|
| Q |
215 |
caaacataattcataaagtcagagatcaatttggact |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27857367 |
caaacataattcataaagtcagagatcaatttggact |
27857331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 27858267 - 27858313
Alignment:
| Q |
251 |
tgttcccacacactagaccgcttgttactagtgttactagtagattg |
297 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
27858267 |
tgttcccacacactagaccgcttgttaatagtgttaccagtagattg |
27858313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 29091934 - 29092068
Alignment:
| Q |
115 |
tatagtattagttactgtcaaatgtattgaatccctttctaagccaattcacttcatttcatgtctttttgttttgcagggcccataccatatgaatgat |
214 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29091934 |
tatagtattagttactgtaaaatgtcttgaatccctttctaatccaattcacttcaattcatatctttttgttttgcagggctaataccatatgaatgat |
29092033 |
T |
|
| Q |
215 |
caaacataattcataaagtcagagatcaatttgga |
249 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
29092034 |
caaacataattcataaagccagagatcaatttgga |
29092068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 29091515 - 29091619
Alignment:
| Q |
14 |
gagataacatctcaagaatcagtccaattagatgatataaattgaaaaccatccacttgaatcataaaggtaacacttgagataaatatgtttggttaat |
113 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
29091515 |
gagataacatctcaagaatcagcccacttagatgatacaaattgaaaaccatccacttgaatcataaaggtaacacttgagataaatatgtttggtcaat |
29091614 |
T |
|
| Q |
114 |
atata |
118 |
Q |
| |
|
||||| |
|
|
| T |
29091615 |
atata |
29091619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 29089539 - 29089495
Alignment:
| Q |
253 |
ttcccacacactagaccgcttgttactagtgttactagtagattg |
297 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
29089539 |
ttcccacacactagaccgcttgttaccagtgttaccagtagattg |
29089495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 48812704 - 48812800
Alignment:
| Q |
14 |
gagataacatctcaagaatcagtccaattagatgatataaattgaaaaccatccacttgaatcataaaggtaacacttgagataaatatgtttggttaat |
113 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
48812704 |
gagataacatctcaagaatcagatcacttagatgatataaattgaaaaccatccacttaaatcataaaggt--------agataaatatgtttggttaat |
48812795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 16047419 - 16047470
Alignment:
| Q |
14 |
gagataacatctcaagaatcagtccaattagatgatataaattgaaaaccat |
65 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16047419 |
gagataacatctcaagaatcagtccacttagatgatataaattgaaaaccat |
16047470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 297
Target Start/End: Complemental strand, 16045451 - 16045405
Alignment:
| Q |
251 |
tgttcccacacactagaccgcttgttactagtgttactagtagattg |
297 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
16045451 |
tgttcccacacactagaccacttgttactagtgttaccagtagattg |
16045405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 40142482 - 40142446
Alignment:
| Q |
251 |
tgttcccacacactagaccgcttgttactagtgttac |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40142482 |
tgttcccacacactagaccgcttgttactagtgttac |
40142446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 47997536 - 47997485
Alignment:
| Q |
160 |
aattcacttcatttcatgtctttttgttttgcagggcccataccatatgaat |
211 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
47997536 |
aattcacttcaatttatgtctttttgttttgtagggccaataccatatgaat |
47997485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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