View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_low_17 (Length: 312)
Name: NF2966_low_17
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_17 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 32376901 - 32377203
Alignment:
| Q |
10 |
catcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32376901 |
catcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaag |
32377000 |
T |
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| Q |
110 |
tctctccatgttccatccaaacacacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttc |
209 |
Q |
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| T |
32377001 |
tctctccatgttccatccaaacgcacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttc |
32377100 |
T |
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| Q |
210 |
ggtctattttctataattcctccttgttgatctttagatacaaatgcgtattttttctcaaagggtttgtctctaacttgaacctgtgattcttcatcta |
309 |
Q |
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| T |
32377101 |
ggtctattttctataattcctccttgttgatctttagatacaaatgcgtattttttctcgaagggtttgtctctaacttgaacctgtgattcttcatcta |
32377200 |
T |
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| Q |
310 |
tct |
312 |
Q |
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||| |
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| T |
32377201 |
tct |
32377203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 312
Target Start/End: Original strand, 32365216 - 32365518
Alignment:
| Q |
10 |
catcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaag |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32365216 |
catcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaag |
32365315 |
T |
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| Q |
110 |
tctctccatgttccatccaaacacacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttc |
209 |
Q |
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| T |
32365316 |
tctctccatgttccatccaaacgcacaaaaagggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttc |
32365415 |
T |
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| Q |
210 |
ggtctattttctataattcctccttgttgatctttagatacaaatgcgtattttttctcaaagggtttgtctctaacttgaacctgtgattcttcatcta |
309 |
Q |
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| T |
32365416 |
ggtctattttctataatacctccttgttgatctttagatgcaaatgcatattttttctcgaatggtttctctctaacttgaacctgtgattcttcatcta |
32365515 |
T |
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| Q |
310 |
tct |
312 |
Q |
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||| |
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| T |
32365516 |
tct |
32365518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 42 - 220
Target Start/End: Original strand, 36121866 - 36122044
Alignment:
| Q |
42 |
atccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccatccaaacacacaaaaag |
141 |
Q |
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||||||||||| |||||||| || |||||||| || || || |||||||||||||| ||||| |||||||||||||| ||||| ||||| ||||||||| |
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| T |
36121866 |
atccaaaagggggccatacagaaaagcataaaagtggcaatgtgaacatacatgtttccaaagccaagtctctccatattccaaccaaatgcacaaaaag |
36121965 |
T |
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| Q |
142 |
ggcagaaaagtgagagatatgataatgatagatcattccaaatgtcaagtattcctccactccatttcggtctattttc |
220 |
Q |
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||||||||||| | ||||| | || | ||| | |||||||||||||||||| |||||||| || ||||||||||| |
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| T |
36121966 |
tacagaaaagtgataaatatgcttgagagatatcgtcccaaatgtcaagtattccaccactccactttggtctattttc |
36122044 |
T |
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