View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966_low_2 (Length: 724)

Name: NF2966_low_2
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966_low_2
NF2966_low_2
[»] chr5 (1 HSPs)
chr5 (12-706)||(3002766-3003461)


Alignment Details
Target: chr5 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 12 - 706
Target Start/End: Original strand, 3002766 - 3003461
Alignment:
Q  12 acagacacatatggaaggtggaaaccatgggaattattcaatgcaaagtgcttataagttgtgcatcaatgagttgattaatgtcggtcatttgaaaatg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3002766 acagacacatatggaaggtggaaaccatgggaattattcaatgcaaagtgcttataagttgtgcatcaatgagttgattaatgtcggtcatttgaaaatg 3002865  T
Q  112 aaaggtgtggtagggaattgggattgcatttggtgtttgaaagttccatcgaaagtgaagaatttaatttggtgagtgtgtcataacgtgccgcttcata 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3002866 aaaggtgtggtagggaattgggattgcatttggtgtttgaaagttccatcgaaagtgaagaatttaatttggtgagtgtgtcataacgtgccgcttcata 3002965  T
Q  212 gaattcgtttgcaagatgaggagttgattgctctcctttatgtgttttttatgaagaatcgggtgaatatgtgttttacttgttttttcaatgtgcaggg 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3002966 gaattcgtttgcaagatgaggagttgattgctctcctttatgtgttttttatgaagaatcgggtgaatatgttttttacttgttttttcaatgtgcaggg 3003065  T
Q  312 gccagggagtatgacctgttgcaaaatggtgatttgtgaaatgaaatattgggtattttacagcagttaagaacaaatgtaaagcagatgagtttttact 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003066 gccagggagtatgacctgttgcaaaatggtgatttgtgaaatgaaatattgggtattttacagcagttaagaacaaatgtaaagcagatgagtttttact 3003165  T
Q  412 gcattacgatattttatctccgacatagtgtctctttgcggttattatttggagtatttggaaaagtcgtgatatccgcatctaggagaatgtttgttaa 511  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3003166 gcattatgatattttatctccgacatagtgtctctttgcggttattatttggagtattcggaaaagtcgtgatatccgcatctaggagaatgtttgttaa 3003265  T
Q  512 caatagcagcatattttttggcgcgctgagcagttatttcaaagctggtgcagg-gcagcggtacatcagtgcaggttcgacagcagtgcagggnnnnnn 610  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||          
T  3003266 caacagcagcatattttttggcgcgctgagtagttatttcaaagctggtgcaggtgcagcggtacatcagtgcaggttcgacagcagtgcagggaaaaaa 3003365  T
Q  611 nccagacacgccaagtttggacgctttgtgcttgctagaacggagtgtcactcttccatttgtttcattaatgaaggtgaagcttgtggccttctt 706  Q
     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3003366 accagatacgccaagtttggacgctttgtgcttgctagaacggagtgtcactcttccatttgtttcattaatgaaggtgaagcttgtggccttctt 3003461  T

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