View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2966_low_21 (Length: 290)
Name: NF2966_low_21
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_21 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 278
Target Start/End: Original strand, 36730156 - 36730412
Alignment:
| Q |
30 |
taaacactaccaaaataaaaattgcagaaatatgagtggctgctgtaagtagcgaagttgctaatttgacctcaaatattcattgcttctcgaagaaaaa |
129 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
36730156 |
taaacacaaccaaaataaaaattgtagaaatatgagtggctgctgtaagtagcgaagttgctaatttcacctcaaatatccattgcttctcgaagaaaaa |
36730255 |
T |
|
| Q |
130 |
gctgacaaagatgaaataagtatggtcatggtcatatttagacc---------atataaattatatattttccatgagtgaccaaggactcaaaggtata |
220 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
36730256 |
gttgacaaagacgaaataagtatggtcatggtcatatttagacctattcaactatataaattatatattttccatgagtg-ccaaggacataaaggtata |
36730354 |
T |
|
| Q |
221 |
tattttgaatggctggatcaatcatattcaaaaagtcaataagatattgtatgctctc |
278 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36730355 |
tattttgaatggctagatcaatcatattcaaaaagtcaataagatattgtatgctctc |
36730412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University