View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_low_22 (Length: 286)
Name: NF2966_low_22
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34971284 - 34971061
Alignment:
| Q |
1 |
tagaccctcttgcttgtatatttgtaaaaagtagtgtctgcatgttttggtcagatgatgattggtttcttgttcctttctatcttttctcattttggtg |
100 |
Q |
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| T |
34971284 |
tagaccctcttgcttgtatatttgtaaaaagtggtgtctgcatgttttggtcagatgatgattggtttcttgttcctttctatcttttctcattttggtg |
34971185 |
T |
|
| Q |
101 |
ttactgcttgagtattatacttccatttggatagattctcacatttatttcaataatatatagagttggagtatatgagactattgtactcttttctttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34971184 |
ttactgcttgagtattatacttccatttggatagatgctcgcatttatttcaataatatatagagttggagtatatgagactattgtactcttttctttt |
34971085 |
T |
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| Q |
201 |
aaatgtttgaaagaggttttataa |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
34971084 |
aaatgtttgaaagaggttttataa |
34971061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 34971039 - 34970993
Alignment:
| Q |
222 |
taataggtaagtatggtgcgagtgtggaatttttgtcattacaaatt |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34971039 |
taataggtaagtatggtgcgagtgtggaatttttgtcattacaaatt |
34970993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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