View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_low_24 (Length: 277)
Name: NF2966_low_24
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 277
Target Start/End: Original strand, 39677752 - 39678015
Alignment:
| Q |
14 |
aatttatatcttagaaggataactacttaatactatacactttttaaaatgaaattatatgattgactaactttctcaatgtgactttagcttataaatt |
113 |
Q |
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| T |
39677752 |
aatttatatcttagaaggataactacttaatactatacactttttaaaatgaaattatatgattgactaaatttctcaatgtgactttagcttataaatt |
39677851 |
T |
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| Q |
114 |
atttcggatgcagtcctcttgtgtcgtaatgcaggcagatgccttgatagaacaatgacggtgacatgtgagtccaccgtaaccacaggaaaaatgagta |
213 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39677852 |
atttcggatggagtcctcttgtgtcgtaatgcaggcagatgccttgataaaacaatgatggtgacatgtgagtccaccgtaaccacaggaaaaatgagta |
39677951 |
T |
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| Q |
214 |
acatttcnnnnnnnggtcatatcaagcatcaagtaaacttatctcaactattataaccaccatt |
277 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39677952 |
acatttctttttttggtcatatcaagcatcaagtaaacttatctcaactattataaccaccatt |
39678015 |
T |
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