View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_low_25 (Length: 268)
Name: NF2966_low_25
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 30 - 246
Target Start/End: Original strand, 28717282 - 28717506
Alignment:
| Q |
30 |
gatatgacgtggaggtaatgtttgcttattatggaatgaatatattcaaagtccaagactttcgtcaagtcaatttcttcagccaactgcctgcgagaaa |
129 |
Q |
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| T |
28717282 |
gatatgacgtagaggtaatgtttgcttattatggaatgaatatattcaaagtccaagactttcgtcaagtcaatttcttcagccaactgcctgcgagaaa |
28717381 |
T |
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| Q |
130 |
caatctggttaagtcaactatacttgcttgaaaatattaaatattggtaacaactattacatattcttt--------tattaatgtatttgtttttaatg |
221 |
Q |
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| T |
28717382 |
caatctggttaagtcaactatacttgcttgaaaatattaaatattggtaacaactattacatattcttttattaatatattaatgtatttgtttttaatg |
28717481 |
T |
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| Q |
222 |
ttcttacagagaaattaccttggga |
246 |
Q |
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| T |
28717482 |
ttcttacagagaaattaccttggga |
28717506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 22196893 - 22196931
Alignment:
| Q |
47 |
atgtttgcttattatggaatgaatatattcaaagtccaa |
85 |
Q |
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| T |
22196893 |
atgtttgcttattatggaatgaatatattcaaagtccaa |
22196931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 22194145 - 22194183
Alignment:
| Q |
47 |
atgtttgcttattatggaatgaatatattcaaagtccaa |
85 |
Q |
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| T |
22194145 |
atgtttgcttattatgcaatgaatatattcaaagtccaa |
22194183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 22197044 - 22197109
Alignment:
| Q |
125 |
agaaacaatctggttaagtcaactatacttgcttgaaaatattaa-atattggtaacaactattac |
189 |
Q |
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| T |
22197044 |
agaaacaatctggttaagtcaactatatttgcttacaaatattaacatttttgtaacaattattac |
22197109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 22194295 - 22194339
Alignment:
| Q |
125 |
agaaacaatctggttaagtcaactatacttgcttgaaaatattaa |
169 |
Q |
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| T |
22194295 |
agaaacaatctggttaagtcaactatatttgcttacaaatattaa |
22194339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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