View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2966_low_26 (Length: 256)
Name: NF2966_low_26
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 32377407 - 32377180
Alignment:
| Q |
18 |
aatgggcacatatgatggtagttgttattctccttcatgttaactgttttgctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagag |
117 |
Q |
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| T |
32377407 |
aatgggcacatatgatggtagttgttattctccttcatgttaactgttttgctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagag |
32377308 |
T |
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| Q |
118 |
accagccattgaacttggaattgccatatccgttgcaattgcggcaccggcaacagctggattgtacattattcttagtccacttggtaaggactatgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32377307 |
accagccattgaacttggaattgccatatccgttgcaattgcggcaccggcaacagctggattgtacattattcttagtccacttggtaaggactatgat |
32377208 |
T |
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| Q |
218 |
tgtgagatagatgaagaatcacaggttc |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
32377207 |
tgtgagatagatgaagaatcacaggttc |
32377180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 32365722 - 32365495
Alignment:
| Q |
18 |
aatgggcacatatgatggtagttgttattctccttcatgttaactgttttgctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32365722 |
aatgggcacatatgatggtagttgttattctccttcatgttaactgttttgctcaatatgcactttgtagtctaaatttaggatataaaagatctgagag |
32365623 |
T |
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| Q |
118 |
accagccattgaacttggaattgccatatccgttgcaattgcggcaccggcaacagctggattgtacattattcttagtccacttggtaaggactatgat |
217 |
Q |
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| T |
32365622 |
accagccattggagttggaattactatatccattgcaattgcagcaccggcaatagctggattgtacactattcttagtccacttggtaaggactatgat |
32365523 |
T |
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| Q |
218 |
tgtgagatagatgaagaatcacaggttc |
245 |
Q |
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| T |
32365522 |
tgtgagatagatgaagaatcacaggttc |
32365495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 36122350 - 36122254
Alignment:
| Q |
32 |
atggtagttgttattctccttcatgttaactgttttgctcaatatgcagtttgtagtctaaatttaggatataaaagatctgagagaccagccattg |
128 |
Q |
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|||||||| || |||||| |||||| |||||||| ||||| |||||| |||| ||||||| ||||| ||||||||||||||| | || ||||||| |
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| T |
36122350 |
atggtagtggtaattctcggtcatgtgaactgtttcgctcagtatgcactttgcggtctaaacttaggttataaaagatctgagcgcccggccattg |
36122254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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