View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2966_low_30 (Length: 241)
Name: NF2966_low_30
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2966_low_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 13937819 - 13938038
Alignment:
| Q |
19 |
tttaggtgctgtgttgcttcggtgggttgatttt-tattcccttagtattgtttttaggtgttgttttgcttaggtgggtgttgctttggtttatattgt |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13937819 |
tttaggtgttgtgttgcttcggtgggttgattttttattcccttagtattgtttttaggtgatgttttgcttaggtgggtgttgctttggtttatattgt |
13937918 |
T |
|
| Q |
118 |
tagctaagatccatactcatgttaagcttgattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggtttt |
217 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13937919 |
ttgctaagatccatactcacgttaagcttgattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggcagtttt |
13938018 |
T |
|
| Q |
218 |
ttggtgttgtctctgtgctc |
237 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
13938019 |
ttggtgttgtctcggtgctc |
13938038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 39286850 - 39287068
Alignment:
| Q |
19 |
tttaggtgctgtgttgcttcggtgggttgatttttattcccttagtattgtttttaggtgttgttttgcttaggtgggtgttgctttggtttatattgtt |
118 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39286850 |
tttaggtgttgtgttgcttcagtgggttgatttttattcccttagtattgtttttaggtgatgttttgcttaggtgggtgttgctttggtttatattgtt |
39286949 |
T |
|
| Q |
119 |
agctaagatccatactcatgttaagcttgattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggttttt |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39286950 |
ttctaagatccatactcacgttaagcttgattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggaggttttt |
39287049 |
T |
|
| Q |
219 |
tggtgttgtctctgtgctc |
237 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
39287050 |
tggtgttgtctcggtgctc |
39287068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 15259642 - 15259450
Alignment:
| Q |
19 |
tttaggtgctgtgttgcttcggtgggttgatttttattcccttagtattgtttttaggtgttgttttgcttaggtgggtgttgctttggtttatattgtt |
118 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259642 |
tttaggtgttgtgttgcttcggtgggtggatttttactcccttagtattgtttttaggtgctgttttgcttaggtgggtgttgctttggtttatattgtt |
15259543 |
T |
|
| Q |
119 |
agctaagatccatactcatgttaagcttgattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggc |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259542 |
tgctaagatccatactcatgttaagattgattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggc |
15259450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 15259456 - 15259334
Alignment:
| Q |
115 |
tgttagctaagatccatactcatgttaagcttgattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggt |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259456 |
tgttggctaagatccatactcatgttaagattgattcctatgtgtttcttgatttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggt |
15259357 |
T |
|
| Q |
215 |
tttttggtgttgtctctgtgctc |
237 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
15259356 |
tttttggtgttgtctcggtgctc |
15259334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 31140560 - 31140780
Alignment:
| Q |
19 |
tttaggtgctgtgttgcttcggtgggttgatttttattcccttagtattgtttttaggtgttgttttgcttaggtgggtgttgctttggtttatattgtt |
118 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31140560 |
tttaggtgctgtgttgcttcagtgggtggatttttattcccttagtattgtttttaggtgctgttttgcttaggtgggtgttgctttggtttatattgtt |
31140659 |
T |
|
| Q |
119 |
agctaagatccatactcatgttaag--cttgattcctatgtg-tttcttgat-ttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggt |
214 |
Q |
| |
|
||||||||||||| |||||||||| | ||| || ||| | | ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31140660 |
tgctaagatccatattcatgttaaggaagtcatt-ttaggtgctgttttgctgttttgaagttttaatctttcggtggtttgtgtgggggtgttggcggt |
31140758 |
T |
|
| Q |
215 |
tttttggtgttgtctctgtgct |
236 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
31140759 |
tttttggtgttgtctcggtgct |
31140780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University