View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966_low_36 (Length: 233)

Name: NF2966_low_36
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966_low_36
NF2966_low_36
[»] chr8 (7 HSPs)
chr8 (13-206)||(38061314-38061507)
chr8 (144-212)||(13274501-13274569)
chr8 (139-206)||(29275805-29275872)
chr8 (143-214)||(19385680-19385751)
chr8 (140-203)||(21241097-21241160)
chr8 (146-188)||(44313256-44313298)
chr8 (146-188)||(44317068-44317110)
[»] chr2 (4 HSPs)
chr2 (20-214)||(24407311-24407505)
chr2 (20-208)||(24411900-24412088)
chr2 (120-204)||(13437699-13437783)
chr2 (146-206)||(36050193-36050253)
[»] chr7 (4 HSPs)
chr7 (111-214)||(24509576-24509679)
chr7 (111-214)||(2435128-2435231)
chr7 (124-214)||(2432910-2433000)
chr7 (144-214)||(43697355-43697425)
[»] chr4 (7 HSPs)
chr4 (120-214)||(6686465-6686559)
chr4 (117-214)||(6683232-6683329)
chr4 (140-214)||(579930-580004)
chr4 (150-208)||(8532494-8532552)
chr4 (128-202)||(17538528-17538603)
chr4 (128-202)||(17539575-17539650)
chr4 (150-206)||(8532765-8532821)
[»] chr6 (4 HSPs)
chr6 (111-214)||(21182568-21182671)
chr6 (55-214)||(20758669-20758835)
chr6 (143-202)||(34237308-34237367)
chr6 (146-188)||(34099594-34099636)
[»] chr1 (6 HSPs)
chr1 (13-196)||(8753149-8753340)
chr1 (117-191)||(49873196-49873270)
chr1 (143-214)||(964626-964696)
chr1 (111-206)||(48713564-48713658)
chr1 (20-97)||(22020155-22020232)
chr1 (146-186)||(4673386-4673426)
[»] chr3 (4 HSPs)
chr3 (139-204)||(6240151-6240216)
chr3 (146-214)||(26362582-26362650)
chr3 (129-203)||(36666061-36666135)
chr3 (146-211)||(4167772-4167836)
[»] scaffold0211 (1 HSPs)
scaffold0211 (140-214)||(20846-20920)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 38061507 - 38061314
Alignment:
Q  13 gagatgaataaacttatcttattgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttaacaaccaaatttaacccgttaccgaat 112  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| ||||||||||| |||||| |||||| ||||||||    
T  38061507 gagatgaataaacttatcttattgagattgttgtgtaattagatcaccgaccactactttatcagcatctttaacaatcaaattaaacccgctaccgaat 38061408  T
Q  113 caatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccc 206  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38061407 taatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcaaactgtccttaaggattttccgcgtaattatacgctaatcccc 38061314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 13274501 - 13274569
Alignment:
Q  144 agtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggat 212  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||||    
T  13274501 agtctgagacgtgctgatcgcactgtccttaaagattttccgcgtaattatacgttaatcccctaggat 13274569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 139 - 206
Target Start/End: Complemental strand, 29275872 - 29275805
Alignment:
Q  139 gaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccc 206  Q
    |||||||||||||||||||| |||| ||| || ||||||||||||||||| |||||||||||||||||    
T  29275872 gaagtagtctgagacgtgctaatcgcactatctttaaggattttccgcgtgattatacgctaatcccc 29275805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 214
Target Start/End: Original strand, 19385680 - 19385751
Alignment:
Q  143 tagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    ||||||||||||||||||||| ||| ||||| | |||||| | |||||||||||||||| |||||| |||||    
T  19385680 tagtctgagacgtgctgatcgcactatccttcatgatttttcacgtaattatacgctaaccccccaagattt 19385751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 21241097 - 21241160
Alignment:
Q  140 aagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 203  Q
    |||||||||||||| | ||||||  | | |||||||||||||||||| ||||||||||||||||    
T  21241097 aagtagtctgagacatactgatcacaatatccttaaggattttccgcataattatacgctaatc 21241160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 44313298 - 44313256
Alignment:
Q  146 tctgagacgtgctgatcgaactgtccttaaggattttccgcgt 188  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  44313298 tctgagacgtgctgaacgcactgtcctcaaggattttccgcgt 44313256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 44317110 - 44317068
Alignment:
Q  146 tctgagacgtgctgatcgaactgtccttaaggattttccgcgt 188  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  44317110 tctgagacgtgctgaacgcactgtcctcaaggattttccgcgt 44317068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 214
Target Start/End: Complemental strand, 24407505 - 24407311
Alignment:
Q  20 ataaacttatcttattgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttaacaaccaaatttaacccgttaccgaatcaatatc 119  Q
    ||||||||||||  |||||||||||||  ||||| |||||||||||||| |||||||  |||||| ||||||||||| || | | ||||||||||  ||     
T  24407505 ataaacttatctctttgagattgctgttgaattatatcaccgaccacaaatttatcaacatctttgacaaccaaattaaatctgctaccgaatcatcata 24407406  T
Q  120 tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    |||||||| || ||| |||||||||||||||||||||| ||||| |||||||||| |||||||| |||||||||| ||||||| ||||| |||||    
T  24407405 tgtagaacaaataagtagtgaagtagtctgagacgtgccgatcgcactgtccttatggattttctgcgtaattatgcgctaattccccaagattt 24407311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 24411900 - 24412088
Alignment:
Q  20 ataaacttatcttattgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttaacaaccaaatttaacccgttaccgaatcaatatc 119  Q
    ||||||||||||  ||||||||| |||  ||||| ||||||||| |||| |||||||  |||||| |||| |||||| || | | ||||||||||  ||     
T  24411900 ataaacttatctctttgagattgttgttgaattatatcaccgactacaaatttatcaacatctttgacaagcaaattaaatctgctaccgaatcatcata 24411999  T
Q  120 tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatccccca 208  Q
    |||||||| |||||| ||||||||||||||||| |||| ||| | |||||||||| ||||||| ||||||||||| | |||||||||||    
T  24412000 tgtagaacaaacaagtagtgaagtagtctgagatgtgccgatggcactgtccttatggattttacgcgtaattatgctctaatccccca 24412088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 13437699 - 13437783
Alignment:
Q  120 tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcc 204  Q
    ||||||||||||||||||||| ||||||||||| ||| | |||| |||||| ||||||||||||| |||||||||||||||||||    
T  13437699 tgtagaacgaacaagcagtgaggtagtctgagatgtgttaatcgcactgtctttaaggattttccacgtaattatacgctaatcc 13437783  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 36050253 - 36050193
Alignment:
Q  146 tctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccc 206  Q
    |||||||||||||||||| |||||||||||| |||||  ||||||||||||||||| ||||    
T  36050253 tctgagacgtgctgatcgcactgtccttaagaattttttgcgtaattatacgctaaacccc 36050193  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 24509576 - 24509679
Alignment:
Q  111 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccagg 210  Q
    ||||| || |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||    
T  24509576 atcaaaatatgtagaacgaacaaccagtgaggtagtctgagacgtgctgatcgcactgtccttaagaattttccgcgtaattatacgctaatcgcccagg 24509675  T
Q  211 attt 214  Q
    ||||    
T  24509676 attt 24509679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 2435231 - 2435128
Alignment:
Q  111 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccagg 210  Q
    ||||| |||||| |||||||||| || ||| ||||||| |||||||||||||| ||| | |||||||||||| |||||||||||||| |||||||||| |    
T  2435231 atcaagatctgtggaacgaacaaacaatgaggtagtcttagacgtgctgatcgcacttttcttaaggatttttcgcgtaattatacgttaatcccccaag 2435132  T
Q  211 attt 214  Q
    ||||    
T  2435131 attt 2435128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 2433000 - 2432910
Alignment:
Q  124 gaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    |||||||||| || ||| |||| |||| || ||||||||  |||||||||||||||||||| ||||||||||||||||||| ||| |||||    
T  2433000 gaacgaacaaacaatgaggtagactgaaacatgctgatcacactgtccttaaggattttccacgtaattatacgctaatcctccaagattt 2432910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 43697425 - 43697355
Alignment:
Q  144 agtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    ||||||||||||||||||||   |||||||||||||||| | |||||||||| ||||| | ||||||||||    
T  43697425 agtctgagacgtgctgatcgcgttgtccttaaggatttttcacgtaattatatgctaaccgcccaggattt 43697355  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 6686559 - 6686465
Alignment:
Q  120 tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    ||||||| ||||||| ||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6686559 tgtagaatgaacaagtagtgaggcagtctgagacgtgctgatcgcactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 6686465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 6683329 - 6683232
Alignment:
Q  117 atctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    |||||||||||||||||| ||||| | |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  6683329 atctgtagaacgaacaagtagtgaggcagtctgagacgtgctgatcgcactgtccttaagaattttccgcgtaattatacgctaatcctccaggattt 6683232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 579930 - 580004
Alignment:
Q  140 aagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    ||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| ||||    
T  579930 aagtagtctgaaacatgctgatcgcactgttcttaaggattttccgcgtaattatacgttaatcccccagaattt 580004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 8532494 - 8532552
Alignment:
Q  150 agacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatccccca 208  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  8532494 agacgtgctgatcgcactgtccttaagaattttccgcgtaattatacgctaatccccca 8532552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 17538603 - 17538528
Alignment:
Q  128 gaacaagcagtgaa-gtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaat 202  Q
    |||||| ||||||| ||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  17538603 gaacaaacagtgaaagtagtctaagacgtgctgatcgcactgtgcttaagcattttccgcgtaattatacgctaat 17538528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 17539650 - 17539575
Alignment:
Q  128 gaacaagcagtgaa-gtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaat 202  Q
    |||||| ||||||| ||||||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||    
T  17539650 gaacaaacagtgaaagtagtctaagacgtgctgatcgcactgtgcttaagcattttccgcgtaattatacgctaat 17539575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 8532765 - 8532821
Alignment:
Q  150 agacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccc 206  Q
    |||||||||||||  ||||||||||| |||||| |||||||||||||||||||||||    
T  8532765 agacgtgctgatcacactgtccttaatgatttttcgcgtaattatacgctaatcccc 8532821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 111 - 214
Target Start/End: Original strand, 21182568 - 21182671
Alignment:
Q  111 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccagg 210  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| |||||| || ||||||||||||||||||| ||||    
T  21182568 atcaaaatctgtagaacgaacaagcagtgaggtagtctgagacgtgctgatcgcattgtccttaatgatttttcgtgtaattatacgctaatccctcagg 21182667  T
Q  211 attt 214  Q
    ||||    
T  21182668 attt 21182671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 20758669 - 20758835
Alignment:
Q  55 atcaccgaccacaactttatcagtatctttaacaaccaaatttaacccgttaccgaatcaata-------tctgtagaacgaacaagcagtgaagtagtc 147  Q
    ||||||||||||||||||||||  |||||| ||||||||||  || | | ||||||||||||        ||| |||||||||||| |||||| ||||||    
T  20758669 atcaccgaccacaactttatcaacatctttgacaaccaaataaaatctgctaccgaatcaattatcaaggtctatagaacgaacaaacagtgaggtagtc 20758768  T
Q  148 tgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    |||||||||||||||  |||||||||||| ||||||| |||  |||||||||||||||||| |||||    
T  20758769 tgagacgtgctgatcacactgtccttaagaattttccacgtgtttatacgctaatcccccaagattt 20758835  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 34237308 - 34237367
Alignment:
Q  143 tagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaat 202  Q
    ||||||||||| |  |||||| |||||||||||||||||||||||||||||||| |||||    
T  34237308 tagtctgagacatattgatcgcactgtccttaaggattttccgcgtaattatacactaat 34237367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 34099594 - 34099636
Alignment:
Q  146 tctgagacgtgctgatcgaactgtccttaaggattttccgcgt 188  Q
    ||||||||||||||| || |||||||| |||||||||||||||    
T  34099594 tctgagacgtgctgaacgcactgtcctcaaggattttccgcgt 34099636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 8753149 - 8753340
Alignment:
Q  13 gagatgaataaacttatct-tattgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttaacaaccaaatttaacccgttaccgaa 111  Q
    ||||| ||||||||||||| | || |||||| |||  || || |||||||||||||||| |||||  |||||| |||||| |||  ||||   |||||||    
T  8753149 gagattaataaacttatctcttttaagattgttgttgaactagatcaccgaccacaactctatcaacatctttgacaaccgaatcaaacctactaccgaa 8753248  T
Q  112 tcaa-tatc------tgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatac 196  Q
    |||| ||||      ||||||||||||||||||||| ||||||||||||| |||||||  |||||| ||||| |||||||||||||||||||    
T  8753249 tcaactatcaagatatgtagaacgaacaagcagtgaggtagtctgagacgagctgatcacactgtctttaagaattttccgcgtaattatac 8753340  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 49873196 - 49873270
Alignment:
Q  117 atctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaat 191  Q
    |||||||||||||||   |||||| |||||||||||||||||||||| | ||| |||||| ||||||||||||||    
T  49873196 atctgtagaacgaactgacagtgaggtagtctgagacgtgctgatcgcattgttcttaagaattttccgcgtaat 49873270  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 964696 - 964626
Alignment:
Q  143 tagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    |||||||||||||||| |||| ||||||||||||||||||| || ||| |||||||||| || |||||||||    
T  964696 tagtctgagacgtgcttatcgcactgtccttaaggattttctgcataaatatacgctaa-cctccaggattt 964626  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 206
Target Start/End: Original strand, 48713564 - 48713658
Alignment:
Q  111 atcaatatctgtagaacgaacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccc 206  Q
    ||||| ||||||||||| |||| ||| | |  |||||||||||||| |||||| ||||| |||||||||||||  ||| |||||||||||| ||||    
T  48713564 atcaagatctgtagaacaaacacgcaataagatagtctgagacgtgttgatcgcactgt-cttaaggattttctacgtgattatacgctaaacccc 48713658  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 22020232 - 22020155
Alignment:
Q  20 ataaacttatcttattgagattgctgtgtaattaaatcaccgaccacaactttatcagtatctttaacaaccaaattt 97  Q
    ||||||||||||  ||||||||| |||  ||||| |||| |||||||||||||||||  ||||||| |||| ||||||    
T  22020232 ataaacttatctctttgagattgttgttaaattagatcatcgaccacaactttatcaacatctttatcaacaaaattt 22020155  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 4673386 - 4673426
Alignment:
Q  146 tctgagacgtgctgatcgaactgtccttaaggattttccgc 186  Q
    ||||||||||||||| || |||||||| |||||||||||||    
T  4673386 tctgagacgtgctgaacgtactgtcctcaaggattttccgc 4673426  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 204
Target Start/End: Original strand, 6240151 - 6240216
Alignment:
Q  139 gaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcc 204  Q
    ||||||||||||||| ||||||||  |||||| ||||||||||||||| ||||||||| |||||||    
T  6240151 gaagtagtctgagacatgctgatcacactgtctttaaggattttccgcttaattatactctaatcc 6240216  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 26362650 - 26362582
Alignment:
Q  146 tctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    ||||||| || ||||||| | |||||||||||||||| ||| |||||||||||||||||| || |||||    
T  26362650 tctgagatgtactgatcgcattgtccttaaggatttttcgcataattatacgctaatccctcatgattt 26362582  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 36666135 - 36666061
Alignment:
Q  129 aacaagcagtgaagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatc 203  Q
    |||||||||||| ||| ||| ||||||| |||||| ||| |||||||| ||||||  | ||||||||| ||||||    
T  36666135 aacaagcagtgaggtaatctcagacgtgttgatcgcactttccttaagtattttctacctaattatacactaatc 36666061  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 4167772 - 4167836
Alignment:
Q  146 tctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccagga 211  Q
    |||||||||||||||||| |||||||| || |||||||||| | ||   |||||||||||||||||    
T  4167772 tctgagacgtgctgatcgcactgtcctcaaagattttccgcat-atagaacgctaatcccccagga 4167836  T

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Target: scaffold0211 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 20846 - 20920
Alignment:
Q  140 aagtagtctgagacgtgctgatcgaactgtccttaaggattttccgcgtaattatacgctaatcccccaggattt 214  Q
    ||||||| ||||||||| |||||| ||| |||||||  |||||| ||||||||||| |||||||| |||||||||    
T  20846 aagtagtatgagacgtgttgatcgcactatccttaaaaattttctgcgtaattatatgctaatcctccaggattt 20920  T

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