View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966_low_40 (Length: 209)

Name: NF2966_low_40
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966_low_40
NF2966_low_40
[»] chr7 (3 HSPs)
chr7 (11-185)||(14653751-14653925)
chr7 (59-112)||(45446544-45446600)
chr7 (21-65)||(4253529-4253573)
[»] chr5 (1 HSPs)
chr5 (12-185)||(17689812-17689985)
[»] chr3 (3 HSPs)
chr3 (59-178)||(20632185-20632304)
chr3 (34-162)||(52999998-53000126)
chr3 (148-185)||(3904397-3904434)
[»] chr4 (3 HSPs)
chr4 (97-174)||(2329146-2329223)
chr4 (139-182)||(24911940-24911983)
chr4 (121-181)||(42191840-42191900)
[»] chr1 (3 HSPs)
chr1 (40-185)||(31649802-31649944)
chr1 (35-185)||(12660363-12660504)
chr1 (137-185)||(2971475-2971523)
[»] chr2 (1 HSPs)
chr2 (120-185)||(35893294-35893359)
[»] chr6 (2 HSPs)
chr6 (137-185)||(12254419-12254467)
chr6 (39-79)||(24338435-24338475)


Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 14653925 - 14653751
Alignment:
Q  11 cagagagttgatctctcacacaaagtaggtcaatttagaccgaactaagtaaacaaatattgttgtgttcttcttctctttctccttttaccttattata 110  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14653925 cagagagttgatctctcacataaagtaggtcaatttagactgaactaggtaaacaaatattgttgtgttcttcttctctttctccttttaccttattata 14653826  T
Q  111 ttgcttatacttgtttaatcacttgagttttagttgttgctaattttgctccacatatcaaagtattggtgtgag 185  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14653825 ttgtttatacttgtttaatcacttgagctttagttgttgctaattttgctccacatatcaaagtattggtgtgag 14653751  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 45446600 - 45446544
Alignment:
Q  59 gtaaacaaatattgttgtgttcttcttct--ct-ttctccttttaccttattatatt 112  Q
    |||||||||||||||||||||||||||||  || ||||||||||| |||||| ||||    
T  45446600 gtaaacaaatattgttgtgttcttcttcttcctcttctccttttatcttattttatt 45446544  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 4253573 - 4253529
Alignment:
Q  21 atctctcacacaaagtaggtcaatttagaccgaactaagtaaaca 65  Q
    ||||||| |||| ||||||||||||| |||||||||| |||||||    
T  4253573 atctctcccacagagtaggtcaatttggaccgaactaggtaaaca 4253529  T

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Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 12 - 185
Target Start/End: Original strand, 17689812 - 17689985
Alignment:
Q  12 agagagttgatctctcacacaaagtaggtcaatttagaccgaactaagtaaacaaatattgttgtgttcttcttctctttctccttttaccttattatat 111  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17689812 agagagttgatctctcacacaaagtaggtcaatttagaccaaaataagtaaacaaatattgttgtgttcttcttctctttctccttttaccttattatat 17689911  T
Q  112 tgcttatacttgtttaatcacttgagttttagttgttgctaattttgctccacatatcaaagtattggtgtgag 185  Q
    || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17689912 tgtttatgcttgtttaatcacttgagttttagttgttgctaattttgctccacgtatcaaagtattggtgtgag 17689985  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 178
Target Start/End: Original strand, 20632185 - 20632304
Alignment:
Q  59 gtaaacaaatattgttgtgttcttcttctctttctccttttaccttattatattgcttatacttgtttaatcacttgagttttagttgttgctaattttg 158  Q
    ||||||||||||||||| |||||| ||||| || |||||||| |||||| ||||| || | |||||||||  | ||  ||||| |||| |||||||||||    
T  20632185 gtaaacaaatattgttgagttctttttctccttatccttttatcttattctattggttgtgcttgtttaacaagtttggttttggttgctgctaattttg 20632284  T
Q  159 ctccacatatcaaagtattg 178  Q
    ||||| | ||||||||||||    
T  20632285 ctccatacatcaaagtattg 20632304  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 52999998 - 53000126
Alignment:
Q  34 agtaggtcaatttagaccgaactaagtaaacaaatattgttgtgttcttcttctctttctccttttaccttattatattgcttatacttgtttaatcact 133  Q
    |||| ||| |||||||||||||||  |||||||||||  |||| || || ||||| ||||| |||||   || | ||||| || | ||||||||||||||    
T  52999998 agtatgtcgatttagaccgaactatataaacaaatatctttgtattgttattctccttctcattttatagtactctattgtttgtgcttgtttaatcact 53000097  T
Q  134 tgagttttagttgttgctaattttgctcc 162  Q
    |  ||||| |||| |||||||||| ||||    
T  53000098 ttggttttggttgctgctaattttactcc 53000126  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 3904397 - 3904434
Alignment:
Q  148 tgctaattttgctccacatatcaaagtattggtgtgag 185  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  3904397 tgctaattttgctctacacatcaaagtattggtgtgag 3904434  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 2329223 - 2329146
Alignment:
Q  97 tttaccttattatattgcttatacttgtttaatcacttgagttttagttgttgctaattttgctccacatatcaaagt 174  Q
    |||| |||||| ||||| || | |||||||||||||||  ||||| |||||||||||||||||| |||| ||||||||    
T  2329223 tttatcttattttattgtttgtgcttgtttaatcactttggttttggttgttgctaattttgcttcacacatcaaagt 2329146  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 24911940 - 24911983
Alignment:
Q  139 tttagttgttgctaattttgctccacatatcaaagtattggtgt 182  Q
    |||||||| | |||||||||||||||| ||||||||||||||||    
T  24911940 tttagttgctactaattttgctccacacatcaaagtattggtgt 24911983  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 42191900 - 42191840
Alignment:
Q  121 ttgtttaatcacttgagttttagttgttgctaattttgctccacatatcaaagtattggtg 181  Q
    ||||||||||||||  ||||| |||| |||||||||| ||| |||  ||||||||||||||    
T  42191900 ttgtttaatcacttcggttttggttgatgctaatttttctcaacacgtcaaagtattggtg 42191840  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 185
Target Start/End: Original strand, 31649802 - 31649944
Alignment:
Q  40 tcaatttagaccgaactaagtaaacaaatattgttgtgttcttcttctctttctccttttaccttattatattgcttatacttgtttaatcacttgagtt 139  Q
    ||||||| ||| |||  ||||||||||||||  |||||||||||| || || ||   |||| ||| ||  |||| || | ||||||||||| |||  |||    
T  31649802 tcaatttggactgaatcaagtaaacaaatatcattgtgttcttctccttttact---tttatcttgtttgattgtttgtgcttgtttaatcgctttggtt 31649898  T
Q  140 ttagttgttgctaattttgctccacatatcaaagtattggtgtgag 185  Q
    || |||| ||||| |||||||||||| |||||| ||||||||||||    
T  31649899 ttggttgctgctatttttgctccacacatcaaaatattggtgtgag 31649944  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 12660504 - 12660363
Alignment:
Q  35 gtaggtcaatttagaccgaactaagtaaacaaatattgttgtgttcttcttctctttctccttttaccttattatattgcttatacttgtttaatcactt 134  Q
    ||||| ||||||||||||||||||||||||||||||    ||||||||||| || |||| | |||| |||||| ||||| |||        | |||||||    
T  12660504 gtaggccaatttagaccgaactaagtaaacaaatatcaacgtgttcttcttatccttct-cgtttatcttattttattgttta--------tgatcactt 12660414  T
Q  135 gagttttagttgttgctaattttgctccacatatcaaagtattggtgtgag 185  Q
     | ||||||||  ||||| ||||| |||||| | |||||||||||||||||    
T  12660413 taattttagttactgctagttttggtccacacaacaaagtattggtgtgag 12660363  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 2971475 - 2971523
Alignment:
Q  137 gttttagttgttgctaattttgctccacatatcaaagtattggtgtgag 185  Q
    ||||| |||| |||||||||||||||||||||||| | |||| ||||||    
T  2971475 gttttggttgctgctaattttgctccacatatcaatgaattgttgtgag 2971523  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 35893359 - 35893294
Alignment:
Q  120 cttgtttaatcacttgagttttagttgttgctaattttgctccacatatcaaagtattggtgtgag 185  Q
    |||||||||||||||  ||||| |||| |||||||||||||| |   |||||||||||||||||||    
T  35893359 cttgtttaatcactttggttttggttgctgctaattttgctcaatgcatcaaagtattggtgtgag 35893294  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 12254419 - 12254467
Alignment:
Q  137 gttttagttgttgctaattttgctccacatatcaaagtattggtgtgag 185  Q
    ||||| ||||||| || ||||||||||||  ||||||||||||||||||    
T  12254419 gttttggttgttgttagttttgctccacacgtcaaagtattggtgtgag 12254467  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 24338475 - 24338435
Alignment:
Q  39 gtcaatttagaccgaactaagtaaacaaatattgttgtgtt 79  Q
    |||||||| |||||||||| ||||||||||||| |||||||    
T  24338475 gtcaatttggaccgaactaggtaaacaaatatttttgtgtt 24338435  T

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