View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2966_low_7 (Length: 402)

Name: NF2966_low_7
Description: NF2966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2966_low_7
NF2966_low_7
[»] chr5 (22 HSPs)
chr5 (9-127)||(13654932-13655050)
chr5 (78-136)||(8204110-8204168)
chr5 (212-275)||(37894449-37894512)
chr5 (78-127)||(33002816-33002865)
chr5 (78-126)||(15184017-15184065)
chr5 (130-247)||(28521311-28521424)
chr5 (79-126)||(39950404-39950451)
chr5 (78-128)||(36626630-36626680)
chr5 (80-122)||(39167442-39167484)
chr5 (79-128)||(2319968-2320017)
chr5 (77-126)||(13655659-13655708)
chr5 (86-121)||(33001937-33001972)
chr5 (78-120)||(4607470-4607512)
chr5 (78-128)||(13404703-13404753)
chr5 (78-127)||(8040444-8040493)
chr5 (78-127)||(12190158-12190207)
chr5 (78-126)||(686417-686464)
chr5 (16-68)||(4553787-4553839)
chr5 (78-126)||(7625473-7625521)
chr5 (78-126)||(26688166-26688214)
chr5 (78-126)||(26957897-26957945)
chr5 (90-126)||(39950444-39950480)
[»] chr4 (35 HSPs)
chr4 (10-128)||(47199327-47199445)
chr4 (9-128)||(28684163-28684282)
chr4 (9-127)||(55159179-55159297)
chr4 (13-64)||(47524130-47524181)
chr4 (77-127)||(47198604-47198654)
chr4 (13-126)||(43738408-43738521)
chr4 (78-130)||(3847882-3847934)
chr4 (78-126)||(10424123-10424171)
chr4 (78-121)||(3848578-3848621)
chr4 (78-127)||(11417686-11417735)
chr4 (78-127)||(29651332-29651381)
chr4 (78-126)||(11417937-11417985)
chr4 (86-126)||(25371553-25371593)
chr4 (78-126)||(36865717-36865765)
chr4 (78-137)||(10425059-10425118)
chr4 (77-127)||(55160066-55160115)
chr4 (78-127)||(26611283-26611332)
chr4 (78-127)||(31836460-31836509)
chr4 (86-119)||(37275095-37275128)
chr4 (78-127)||(52757812-52757861)
chr4 (90-126)||(28683508-28683544)
chr4 (86-126)||(38694962-38695002)
chr4 (78-126)||(39523271-39523319)
chr4 (78-126)||(45235960-45236008)
chr4 (78-121)||(38143737-38143780)
chr4 (78-128)||(30478307-30478357)
chr4 (77-127)||(42544487-42544537)
chr4 (78-127)||(21166375-21166424)
chr4 (80-121)||(26610350-26610391)
chr4 (78-127)||(47377598-47377647)
chr4 (78-127)||(48013316-48013365)
chr4 (78-126)||(30808621-30808669)
chr4 (78-126)||(42545563-42545611)
chr4 (78-126)||(45230365-45230413)
chr4 (78-126)||(47376852-47376900)
[»] chr6 (20 HSPs)
chr6 (9-126)||(9574502-9574619)
chr6 (78-126)||(7531829-7531877)
chr6 (210-273)||(9729818-9729881)
chr6 (78-127)||(7193337-7193386)
chr6 (78-127)||(7532440-7532489)
chr6 (78-126)||(33480628-33480676)
chr6 (78-121)||(22582479-22582522)
chr6 (78-121)||(22587310-22587353)
chr6 (78-119)||(33018416-33018457)
chr6 (78-126)||(3543063-3543111)
chr6 (86-126)||(15083326-15083366)
chr6 (78-126)||(22579935-22579983)
chr6 (78-126)||(24125972-24126020)
chr6 (78-126)||(33018167-33018215)
chr6 (78-121)||(3542819-3542862)
chr6 (78-121)||(33479701-33479744)
chr6 (78-120)||(26227408-26227450)
chr6 (78-127)||(14337557-14337606)
chr6 (77-121)||(9573640-9573684)
chr6 (78-126)||(24126718-24126766)
[»] chr8 (27 HSPs)
chr8 (9-126)||(62171-62288)
chr8 (9-126)||(44752501-44752618)
chr8 (9-126)||(39254787-39254906)
chr8 (9-114)||(1366544-1366649)
chr8 (9-68)||(12351121-12351180)
chr8 (13-126)||(216393-216506)
chr8 (13-126)||(692953-693066)
chr8 (13-126)||(697162-697275)
chr8 (13-126)||(730016-730129)
chr8 (13-126)||(853911-854024)
chr8 (77-128)||(61452-61503)
chr8 (77-126)||(1365829-1365878)
chr8 (134-275)||(35861028-35861163)
chr8 (212-275)||(5099809-5099872)
chr8 (77-128)||(39255751-39255802)
chr8 (77-127)||(44751607-44751657)
chr8 (78-127)||(41859309-41859358)
chr8 (78-126)||(5035276-5035324)
chr8 (78-127)||(5034897-5034946)
chr8 (78-127)||(34992264-34992313)
chr8 (78-119)||(37639718-37639759)
chr8 (77-127)||(25876520-25876570)
chr8 (89-127)||(44098432-44098470)
chr8 (78-119)||(27918047-27918088)
chr8 (78-130)||(32328766-32328818)
chr8 (78-126)||(32536708-32536756)
chr8 (78-126)||(42345166-42345214)
[»] chr3 (16 HSPs)
chr3 (11-126)||(17227881-17227996)
chr3 (78-129)||(36750437-36750488)
chr3 (80-126)||(17226968-17227014)
chr3 (78-121)||(42145278-42145321)
chr3 (78-126)||(19132812-19132860)
chr3 (78-126)||(32489946-32489994)
chr3 (79-126)||(31556217-31556264)
chr3 (86-121)||(32490203-32490238)
chr3 (78-129)||(43638078-43638129)
chr3 (86-128)||(41755497-41755539)
chr3 (78-119)||(37105077-37105118)
chr3 (86-127)||(44687171-44687212)
chr3 (78-119)||(49757182-49757223)
chr3 (78-126)||(19132563-19132611)
chr3 (86-126)||(38923673-38923713)
chr3 (78-126)||(45242987-45243035)
[»] chr1 (21 HSPs)
chr1 (11-127)||(35616707-35616824)
chr1 (11-126)||(48870686-48870801)
chr1 (9-68)||(37874892-37874951)
chr1 (78-127)||(51987826-51987875)
chr1 (16-68)||(17494470-17494522)
chr1 (78-126)||(51988464-51988512)
chr1 (78-128)||(51974435-51974485)
chr1 (78-126)||(8560839-8560887)
chr1 (78-126)||(16270207-16270255)
chr1 (78-126)||(23440865-23440913)
chr1 (86-128)||(48972453-48972495)
chr1 (81-126)||(35615767-35615812)
chr1 (77-126)||(37874064-37874113)
chr1 (78-127)||(43737978-43738027)
chr1 (86-126)||(193850-193890)
chr1 (78-126)||(9948887-9948935)
chr1 (80-127)||(48869768-48869815)
chr1 (78-119)||(1012554-1012595)
chr1 (89-126)||(48971705-48971742)
chr1 (78-126)||(194701-194749)
chr1 (78-126)||(43737729-43737777)
[»] scaffold1037 (1 HSPs)
scaffold1037 (8-120)||(2829-2941)
[»] scaffold1031 (1 HSPs)
scaffold1031 (8-120)||(2948-3060)
[»] chr2 (20 HSPs)
chr2 (13-64)||(36475841-36475892)
chr2 (9-63)||(5277326-5277380)
chr2 (77-127)||(5276464-5276514)
chr2 (78-126)||(13134318-13134366)
chr2 (214-273)||(42428177-42428236)
chr2 (78-128)||(14573999-14574049)
chr2 (78-128)||(21471015-21471065)
chr2 (78-126)||(21471954-21472002)
chr2 (80-128)||(45139690-45139738)
chr2 (80-127)||(41042541-41042588)
chr2 (78-127)||(37547997-37548046)
chr2 (78-126)||(4479702-4479750)
chr2 (78-126)||(14573261-14573309)
chr2 (78-126)||(37157522-37157570)
chr2 (78-128)||(4478849-4478899)
chr2 (77-119)||(33433159-33433201)
chr2 (90-127)||(1164788-1164825)
chr2 (78-127)||(19521917-19521966)
chr2 (79-128)||(43789428-43789477)
chr2 (80-123)||(5278398-5278442)
[»] chr7 (16 HSPs)
chr7 (78-128)||(38778852-38778902)
chr7 (78-128)||(41194511-41194561)
chr7 (78-127)||(37468909-37468958)
chr7 (78-126)||(668179-668227)
chr7 (78-126)||(17145622-17145670)
chr7 (78-126)||(37469005-37469053)
chr7 (78-126)||(38779563-38779611)
chr7 (78-121)||(7677809-7677852)
chr7 (210-273)||(15011366-15011429)
chr7 (78-127)||(4261596-4261645)
chr7 (78-126)||(669103-669151)
chr7 (86-121)||(7677422-7677457)
chr7 (78-121)||(42455040-42455083)
chr7 (78-127)||(37864307-37864356)
chr7 (79-128)||(45887981-45888030)
chr7 (78-126)||(38072291-38072339)
[»] scaffold0311 (1 HSPs)
scaffold0311 (78-127)||(160-209)
[»] scaffold0041 (2 HSPs)
scaffold0041 (78-126)||(27221-27269)
scaffold0041 (78-126)||(27575-27623)


Alignment Details
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 13655050 - 13654932
Alignment:
Q  9 gaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctccttt 108  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  13655050 gaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttcctatggtgggaaagaagtctccttt 13654951  T
Q  109 cccaaattaaatgccacct 127  Q
    ||||||||||||| |||||    
T  13654950 cccaaattaaatgtcacct 13654932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 8204168 - 8204110
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctagacttata 136  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||||| |||||    
T  8204168 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacctagagttata 8204110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 37894449 - 37894512
Alignment:
Q  212 aattttcacttttaaagtgcattggaaagtggaaataagtcttcaaaagctaatccaaacacac 275  Q
    ||||||||| ||||||||||||||| |||||||||| || || ||||| |||||||||||||||    
T  37894449 aattttcacgtttaaagtgcattgggaagtggaaatgagcctccaaaaactaatccaaacacac 37894512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 33002816 - 33002865
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  33002816 actttcccatggtgggaaagaactctcctttcccaaattaaatgacacct 33002865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 15184017 - 15184065
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  15184017 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 28521311 - 28521424
Alignment:
Q  130 acttataggttgtttgtttttgctgaaaattagcaacagacgtgcgtttaaagtagaaactattaattgtggcttcacaaacaattttcacttttaaagt 229  Q
    |||| ||| |||||||||| ||  | ||||| |||| |||| |||||||||||||||| |||||||||||  ||||    | ||||||||  ||||||||    
T  28521311 acttttagcttgtttgtttatgtagcaaattggcaagagacttgcgtttaaagtagaagctattaattgtaacttc----ataattttcatgtttaaagt 28521406  T
Q  230 gcattggaaagtggaaat 247  Q
    | ||||||||||||||||    
T  28521407 gaattggaaagtggaaat 28521424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 39950451 - 39950404
Alignment:
Q  79 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  39950451 ctttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 39950404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 36626630 - 36626680
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    ||||||| |||||||||||||| |||| |||||||||||||||| ||||||    
T  36626630 actttcccatggtgggaaagaactctcatttcccaaattaaatggcaccta 36626680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 39167442 - 39167484
Alignment:
Q  80 tttcctatggtgggaaagaagtctcctttcccaaattaaatgc 122  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  39167442 tttcccatgatgggaaagaagtctcctttcccaaattaaatgc 39167484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 2319968 - 2320017
Alignment:
Q  79 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    |||||||||||||||||| || |  |||||||||||||||||||||||||    
T  2319968 ctttcctatggtgggaaaaaactagcctttcccaaattaaatgccaccta 2320017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 13655659 - 13655708
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||| ||  ||||||||||||||| |||||||||||||||||||||    
T  13655659 gactttcccataatgggaaagaagtctcttttcccaaattaaatgccacc 13655708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 33001972 - 33001937
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    |||||||||||||| |||||||||||||||||||||    
T  33001972 atggtgggaaagaactctcctttcccaaattaaatg 33001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 4607512 - 4607470
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaat 120  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||    
T  4607512 actttcccatggtgggaaaaaagtctactttcccaaattaaat 4607470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 13404703 - 13404753
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    ||||||| ||||||||||| |||  ||| ||||||||||||||||||||||    
T  13404703 actttcccatggtgggaaaaaagagtccgttcccaaattaaatgccaccta 13404753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 8040444 - 8040493
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| | |||||||||||| | ||||||||||||||||||| |||||    
T  8040444 actttcccacggtgggaaagaaatttcctttcccaaattaaatggcacct 8040493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 12190158 - 12190207
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||||||||||| || |||| |||||||||||||||| |||||    
T  12190158 actttcccatggtgggaaaaaactctcttttcccaaattaaatggcacct 12190207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 686464 - 686417
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| ||||    
T  686464 actttcccatggtgggaaa-aactctcctttcccaaattaaatggcacc 686417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 4553839 - 4553787
Alignment:
Q  16 atatagtgtggatagactataataacaattgtggtactactcaatctaatggt 68  Q
    |||| |||| |||||||||||||||||||  |||||||||| |||| ||||||    
T  4553839 atatggtgtagatagactataataacaatgatggtactacttaatcaaatggt 4553787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 7625521 - 7625473
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||    
T  7625521 actttcccatgatgggaaagaagtttgctttcccaaattaaatgacacc 7625473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 26688214 - 26688166
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||    
T  26688214 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 26688166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 26957945 - 26957897
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||    
T  26957945 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 26957897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 39950444 - 39950480
Alignment:
Q  90 tgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  39950444 tgggaaagaactctcctttcccaaattaaatggcacc 39950480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 47199327 - 47199445
Alignment:
Q  10 aagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttc 109  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||        |||||||||||||||||||||||||||| ||||    
T  47199327 aagaaaatattgtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaatgactttcctatggtgggaaagaagtctcttttc 47199426  T
Q  110 ccaaattaaatgccaccta 128  Q
    |||||||||||||||||||    
T  47199427 ccaaattaaatgccaccta 47199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 28684163 - 28684282
Alignment:
Q  9 gaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctccttt 108  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||         ||||||||||||| ||||| |||||||||||    
T  28684163 gaagaaaatatagtgtggctagactataataacaatggtggtactactcaatctaatggtaaaaaaaaaactttcctatggtaggaaaaaagtctccttt 28684262  T
Q  109 cccaaattaaatgccaccta 128  Q
    ||||||||||||| ||||||    
T  28684263 cccaaattaaatgtcaccta 28684282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 55159297 - 55159179
Alignment:
Q  9 gaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctccttt 108  Q
    ||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||        |||||||| ||||| |||||||||||||||||    
T  55159297 gaagaaattatagtgtggatagactataataataatggtggtactactcaatctaatggtaaaaaaaagactttcccatggtaggaaagaagtctccttt 55159198  T
Q  109 cccaaattaaatgccacct 127  Q
    |||||||||||| ||||||    
T  55159197 cccaaattaaataccacct 55159179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 47524130 - 47524181
Alignment:
Q  13 aaaatatagtgtggatagactataataacaattgtggtactactcaatctaa 64  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  47524130 aaaatatagtgtggataggctataataacaatggtggtactactcaatctaa 47524181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 47198654 - 47198604
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  47198654 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgtcacct 47198604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 43738408 - 43738521
Alignment:
Q  13 aaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttccca 112  Q
    |||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||        |||||||| ||||||| |||||||| || |||| ||    
T  43738408 aaaatagagtgtggatagactatagtaataatggtggtactactcaatctaatggttaagaaaagactttcccatggtggaaaagaagtatcatttctca 43738507  T
Q  113 aattaaatgccacc 126  Q
      ||||||| ||||    
T  43738508 ggttaaatggcacc 43738521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 3847934 - 3847882
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctaga 130  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  3847934 actttcccatggtgggaaaaaagtctcctttcccaaattaaatgccacttaga 3847882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 10424171 - 10424123
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  10424171 actttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 10424123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 3848578 - 3848621
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  3848578 actttcccatggtgggaaagaagtctcctttcccaaattaaatg 3848621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 11417735 - 11417686
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  11417735 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 11417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 29651332 - 29651381
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  29651332 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 29651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 11417937 - 11417985
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  11417937 actttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 25371553 - 25371593
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  25371553 atggtgggaaagaagtctcctttcccaaattaaatgtcacc 25371593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 36865717 - 36865765
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  36865717 actttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 10425059 - 10425118
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctagacttatag 137  Q
    ||||||| |||||||||||||| |||||||||| |||||||||| |||||  ||||||||    
T  10425059 actttcccatggtgggaaagaactctcctttcctaaattaaatggcaccttaacttatag 10425118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 55160066 - 55160115
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  55160066 gactttcccatggtgagaaa-aagtctcctttcccaaattaaatgccacct 55160115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 26611283 - 26611332
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| |||||    
T  26611283 actttcccatggtgggaaaaaactctcctttcccaaattaaatgacacct 26611332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 31836460 - 31836509
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||| |||||    
T  31836460 actttcccatggtgggaaagaactctcctttctcaaattaaatggcacct 31836509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 37275128 - 37275095
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaa 119  Q
    ||||||||||||||||||||||||||||||||||    
T  37275128 atggtgggaaagaagtctcctttcccaaattaaa 37275095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 52757861 - 52757812
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    |||||||||||| |||||| |||||| ||||||||||||||||| |||||    
T  52757861 actttcctatggagggaaaaaagtcttctttcccaaattaaatggcacct 52757812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 28683544 - 28683508
Alignment:
Q  90 tgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||||||||||||| ||||||||||||||||||    
T  28683544 tgggaaagaagtctccttccccaaattaaatgccacc 28683508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 38694962 - 38695002
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  38694962 atggtgggaaagaactctcctttcccaaattaaatggcacc 38695002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 39523271 - 39523319
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  39523271 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 39523319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 45235960 - 45236008
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| |||||||| |||||||||||| ||||    
T  45235960 actttcccatggtgggaaagaactctccttttccaaattaaatggcacc 45236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 38143737 - 38143780
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||||| |||||||||||||| |||| ||||||||||||||||    
T  38143737 actttcccatggtgggaaagaactctcatttcccaaattaaatg 38143780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 30478357 - 30478307
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||||    
T  30478357 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcaccta 30478307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 42544537 - 42544487
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    |||||| | ||||||||||| |||||| ||||||||||||||||| |||||    
T  42544537 gacttttccatggtgggaaaaaagtcttctttcccaaattaaatggcacct 42544487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 21166375 - 21166424
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||| |||||||||| ||||||||| ||||||||||| |||||    
T  21166375 actttcccatgatgggaaagaactctcctttctcaaattaaatggcacct 21166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 26610391 - 26610350
Alignment:
Q  80 tttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||| |||||||||||||| |||| ||||||||||||||||    
T  26610391 tttcccatggtgggaaagaactctcatttcccaaattaaatg 26610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 47377598 - 47377647
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||||||||||| || || |||||||||||||||||| |||||    
T  47377598 actttcccatggtgggaaacaactcccctttcccaaattaaatggcacct 47377647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 48013365 - 48013316
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| |||||    
T  48013365 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 48013316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 30808669 - 30808621
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||||||| || ||||||||||||  ||||||||||||    
T  30808669 actttcccatggtgggaaacaactctcctttcccattttaaatgccacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 42545563 - 42545611
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||||||| ||||||| |||| | ||||||||||||||||| ||||    
T  42545563 actttcctatgatgggaaaaaagtgtactttcccaaattaaatggcacc 42545611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 45230413 - 45230365
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| |||| |||||| ||||||||| ||||    
T  45230413 actttcccatggtgggaaagaactctcttttcccgaattaaatggcacc 45230365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 47376900 - 47376852
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||| ||||||| || || |||||||||||||||||||||||    
T  47376900 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 9574502 - 9574619
Alignment:
Q  9 gaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctccttt 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||        ||||||||||||||||||||||||||||||||    
T  9574502 gaagaaaatatagtgtggatagactataataacaatggtggtactactcaatttaatggtaaaaaaaagactttcctatggtgggaaagaagtctccttt 9574601  T
Q  109 cccaaattaaatgccacc 126  Q
    ||||| ||||||||||||    
T  9574602 cccaagttaaatgccacc 9574619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 7531877 - 7531829
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  7531877 actttcccatggtaggaaagaagtctcctttcccaaattaaatgccacc 7531829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 273
Target Start/End: Original strand, 9729818 - 9729881
Alignment:
Q  210 acaattttcacttttaaagtgcattggaaagtggaaataagtcttcaaaagctaatccaaacac 273  Q
    ||||||||||| ||||||||||||||| ||||||| || || || |||||||||||||||||||    
T  9729818 acaattttcacgtttaaagtgcattgggaagtggagatgagcctccaaaagctaatccaaacac 9729881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 7193386 - 7193337
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  7193386 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 7193337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 7532440 - 7532489
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||||    
T  7532440 actttcccatggtgaaaaagaagtctcctttcccaaattaaatgccacct 7532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 33480628 - 33480676
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  33480628 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 22582479 - 22582522
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  22582479 actttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 22587310 - 22587353
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  22587310 actttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 33018416 - 33018457
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaa 119  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  33018416 actttcccatggtgggaaagaactctcctttcccaaattaaa 33018457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 3543063 - 3543111
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| ||||    
T  3543063 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 3543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 15083326 - 15083366
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  15083326 atggtgggaaagaactctcctttcccaaattaaatggcacc 15083366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 22579983 - 22579935
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  22579983 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacc 22579935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 24126020 - 24125972
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||||||| || || |||||||||||||||||||||||    
T  24126020 actttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 33018215 - 33018167
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  33018215 actttccaatgatgggaaagaactctcctttcccaaattaaatggcacc 33018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 3542862 - 3542819
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  3542862 actttcccatggtgggaaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 33479744 - 33479701
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  33479744 actttcccatggtgggaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 26227408 - 26227450
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaat 120  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||    
T  26227408 actttcccatggtggaaaagaagtctcatttcccaaattaaat 26227450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 14337557 - 14337606
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| |||||    
T  14337557 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 14337606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 9573684 - 9573640
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||||||||| |||| ||||||||||| |||||||| |||||||    
T  9573684 gactttcctatagtggaaaagaagtctcatttcccaagttaaatg 9573640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 24126718 - 24126766
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||| ||||||| || || |||||||||||||||||||||||    
T  24126718 actttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 62171 - 62288
Alignment:
Q  9 gaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctccttt 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |        ||||||||||||||||||||||||||||||||    
T  62171 gaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatgataaaaaaatgactttcctatggtgggaaagaagtctccttt 62270  T
Q  109 cccaaattaaatgccacc 126  Q
    | ||||||||||| ||||    
T  62271 ctcaaattaaatgtcacc 62288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 44752501 - 44752618
Alignment:
Q  9 gaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctccttt 108  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||        || |||||||||||||||||||||||||||||    
T  44752501 gaagaaaatatagtgtggatagactataataacaatggtggtactactcaatttaatggtaaaaaaaagattttcctatggtgggaaagaagtctccttt 44752600  T
Q  109 cccaaattaaatgccacc 126  Q
    ||||| ||||||||||||    
T  44752601 cccaagttaaatgccacc 44752618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 39254906 - 39254787
Alignment:
Q  9 gaagaaaatatagtgtg--gatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcct 106  Q
    |||||||||||||||||  |||||||||||||||||||  |||||||||||||||||||| |        ||||||||||||||||||||||||||||||    
T  39254906 gaagaaaatatagtgtgtggatagactataataacaatgatggtactactcaatctaatgataaaaaaaagactttcctatggtgggaaagaagtctcct 39254807  T
Q  107 ttcccaaattaaatgccacc 126  Q
    ||||||||||||||||||||    
T  39254806 ttcccaaattaaatgccacc 39254787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 1366544 - 1366649
Alignment:
Q  9 gaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctccttt 108  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        |||||| ||||||||| |||||||||||||||    
T  1366544 gaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaatgacttttctatggtggaaaagaagtctccttt 1366643  T
Q  109 cccaaa 114  Q
    ||||||    
T  1366644 cccaaa 1366649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 12351180 - 12351121
Alignment:
Q  9 gaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggt 68  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12351180 gaagaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggt 12351121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 216506 - 216393
Alignment:
Q  13 aaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttccca 112  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||        |||||| | || ||||||||||||| | ||||||||    
T  216506 aaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaagtattctttccca 216407  T
Q  113 aattaaatgccacc 126  Q
     |||||||| ||||    
T  216406 gattaaatggcacc 216393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 693066 - 692953
Alignment:
Q  13 aaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttccca 112  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||        |||||| | || ||||||||||||| | ||||||||    
T  693066 aaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaagtattctttccca 692967  T
Q  113 aattaaatgccacc 126  Q
     |||||||| ||||    
T  692966 gattaaatggcacc 692953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 697275 - 697162
Alignment:
Q  13 aaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttccca 112  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||        |||||| | || ||||||||||||| | ||||||||    
T  697275 aaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaagtattctttccca 697176  T
Q  113 aattaaatgccacc 126  Q
     |||||||| ||||    
T  697175 gattaaatggcacc 697162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 730129 - 730016
Alignment:
Q  13 aaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttccca 112  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||        |||||| | || ||||||||||||| | ||||||||    
T  730129 aaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaagtattctttccca 730030  T
Q  113 aattaaatgccacc 126  Q
     |||||||| ||||    
T  730029 gattaaatggcacc 730016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 854024 - 853911
Alignment:
Q  13 aaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttccca 112  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||        |||||| | || ||||||||||||| | ||||||||    
T  854024 aaaataaagtgtggatagactatagtaacaatggtggtactactcaatctaatggttaaaaaaagacttttccatagtgggaaagaagtattctttccca 853925  T
Q  113 aattaaatgccacc 126  Q
     |||||||| ||||    
T  853924 gattaaatggcacc 853911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 61503 - 61452
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  61503 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgccaccta 61452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 1365878 - 1365829
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1365878 gactttcccatggtgggaaagaagtctcctttcccaaattaaatgccacc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 134 - 275
Target Start/End: Original strand, 35861028 - 35861163
Alignment:
Q  134 ataggttgtttgtttttgctgaaaattagcaacagacgtgcgtttaaagtagaaactattaattgtggcttcacaaacaattttcacttttaaagtgcat 233  Q
    |||| |||||| |||||||   ||||| |||||| |||||||||||| |||||||||| |||||||||||||    | ||||||||| |||||  ||||     
T  35861028 atagtttgtttatttttgcgataaattggcaacaaacgtgcgtttaaggtagaaactactaattgtggcttc----ataattttcacatttaa--tgcac 35861121  T
Q  234 tggaaagtggaaataagtcttcaaaagctaatccaaacacac 275  Q
    ||| |||||||||| || || |||||||||||||||| ||||    
T  35861122 tgggaagtggaaatgagcctccaaaagctaatccaaatacac 35861163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 5099872 - 5099809
Alignment:
Q  212 aattttcacttttaaagtgcattggaaagtggaaataagtcttcaaaagctaatccaaacacac 275  Q
    ||||||||||||||||||||||   |||||| |||| ||||| |||||||||||||||||||||    
T  5099872 aattttcacttttaaagtgcatctaaaagtgaaaatgagtctccaaaagctaatccaaacacac 5099809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 39255751 - 39255802
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  39255751 gactttcccatggtgggaaagaagtctcatttcccaagttaaatgccaccta 39255802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 44751657 - 44751607
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    |||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  44751657 gactttcccatgatgggaaagaagtctcctttcccaagttaaatgccacct 44751607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 41859358 - 41859309
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  41859358 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 41859309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 5035276 - 5035324
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||||||||||| |||||| ||||||||||||||||||||| ||||    
T  5035276 actttcctatggtggaaaagaactctcctttcccaaattaaatggcacc 5035324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 5034946 - 5034897
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| |||||    
T  5034946 actttcccatggtggaaaagaactctcctttcccaaattaaatggcacct 5034897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 34992264 - 34992313
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| |||||    
T  34992264 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacct 34992313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 37639759 - 37639718
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaa 119  Q
    ||||||| |||||||||||||| |||||||||||||||||||    
T  37639759 actttcccatggtgggaaagaactctcctttcccaaattaaa 37639718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 25876570 - 25876520
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    |||||||| ||||||||||| || ||| ||||||||||||||||| |||||    
T  25876570 gactttcccatggtgggaaaaaaatcttctttcccaaattaaatggcacct 25876520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 44098432 - 44098470
Alignment:
Q  89 gtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  44098432 gtgggaaagaactctcctttcccaaattaaatggcacct 44098470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 27918047 - 27918088
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaa 119  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||    
T  27918047 actttcccatggtgggaaaaaagtctcatttcccaaattaaa 27918088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 32328766 - 32328818
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctaga 130  Q
    ||||||||||  ||||||| || | ||||||||||||||||| ||||||||||    
T  32328766 actttcctatcatgggaaaaaactatcctttcccaaattaaacgccacctaga 32328818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 32536756 - 32536708
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| |||| ||||| |||||||||| ||||    
T  32536756 actttcccatggtgggaaagaactctcatttcctaaattaaatggcacc 32536708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 42345214 - 42345166
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||    
T  42345214 actttcccatgatgggaaagaagtttactttcccaaattaaatggcacc 42345166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 17227881 - 17227996
Alignment:
Q  11 agaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcc 110  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        ||||||   |||||||||||||||||||||||||    
T  17227881 agaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttttcatggtgggaaagaagtctcctttcc 17227980  T
Q  111 caaattaaatgccacc 126  Q
    ||||||||||||||||    
T  17227981 caaattaaatgccacc 17227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 36750437 - 36750488
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctag 129  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||||    
T  36750437 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacctag 36750488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 17227014 - 17226968
Alignment:
Q  80 tttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  17227014 tttcccatggtgggaaagaaatctcctttcccaaattaaatgccacc 17226968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 42145278 - 42145321
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  42145278 actttcctatggtggaaaaaaagtctcctttcccaaattaaatg 42145321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 19132812 - 19132860
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| | ||||||||||||||||||| ||||    
T  19132812 actttcccatggtgggaaagaactttcctttcccaaattaaatggcacc 19132860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 32489994 - 32489946
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  32489994 actttcccatggtggaaaagaattctcctttcccaaattaaatggcacc 32489946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 31556217 - 31556264
Alignment:
Q  79 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  31556217 ctttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 31556264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 32490203 - 32490238
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    |||||||||||||| |||||||||||||||||||||    
T  32490203 atggtgggaaagaactctcctttcccaaattaaatg 32490238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 43638078 - 43638129
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacctag 129  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| |||||||    
T  43638078 actttcccatgatgggaaagaagtttactttcccaaattaaatggcacctag 43638129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 128
Target Start/End: Complemental strand, 41755539 - 41755497
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    ||||||||||| || ||||||||||||||||||||| ||||||    
T  41755539 atggtgggaaaaaactctcctttcccaaattaaatgacaccta 41755497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 37105077 - 37105118
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaa 119  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||    
T  37105077 actttcccatggtgggaaaaaagtctcgtttcccaaattaaa 37105118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 44687171 - 44687212
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||| ||||||||||||||||||||| |||||    
T  44687171 atggtggaaaagaattctcctttcccaaattaaatggcacct 44687212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 49757182 - 49757223
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaa 119  Q
    ||||||| ||||| ||||| ||||||||||||||||||||||    
T  49757182 actttcccatggtaggaaaaaagtctcctttcccaaattaaa 49757223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 19132611 - 19132563
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| || || |||||||| ||||||||||||||||||||| ||||    
T  19132611 actttcccatagtaggaaagaactctcctttcccaaattaaatggcacc 19132563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 38923673 - 38923713
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||||||||| |||| |||||||||||||||| ||||    
T  38923673 atggtgggaaagaactctcatttcccaaattaaatggcacc 38923713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 45242987 - 45243035
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||| |||||| ||| ||||||||||||||||| ||||    
T  45242987 actttcccatggtggaaaagaactcttctttcccaaattaaatggcacc 45243035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 35616707 - 35616824
Alignment:
Q  11 agaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggt-nnnnnnnngactttcctatggtgggaaagaagtctcctttc 109  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||         |||||||| ||||||||||||||||||||||||    
T  35616707 agaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaaagactttcccatggtgggaaagaagtctcctttc 35616806  T
Q  110 ccaaattaaatgccacct 127  Q
    |||| |||||||||||||    
T  35616807 ccaagttaaatgccacct 35616824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 48870686 - 48870801
Alignment:
Q  11 agaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctttcc 110  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        |||||||| ||||||||||| ||||||| |||||    
T  48870686 agaaaatatagtgtggatagactataataacaatggtggtactactcaatctaatggtaaaaaaaagactttcccatggtgggaaaaaagtctcatttcc 48870785  T
Q  111 caaattaaatgccacc 126  Q
    ||| |||||| |||||    
T  48870786 caagttaaattccacc 48870801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 37874892 - 37874951
Alignment:
Q  9 gaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggt 68  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  37874892 gaagaaaatatagtgtggatagactataataacaatgatggtactaatcaatctaatggt 37874951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 51987875 - 51987826
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51987875 actttcccatggtgggaaagaagtctcctttcccaaattaaatgccacct 51987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 17494522 - 17494470
Alignment:
Q  16 atatagtgtggatagactataataacaattgtggtactactcaatctaatggt 68  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  17494522 atatagtgtggatagactataataacaatggtggtactattcaatctaatggt 17494470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 51988464 - 51988512
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  51988464 actttcccatggtggaaaagaagtctcctttcccaaattaaatgccacc 51988512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 51974485 - 51974435
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  51974485 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 51974435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 8560887 - 8560839
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  8560887 actttcccatgatgggaaagaagtctcctttcccaaattaaatgtcacc 8560839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 16270255 - 16270207
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  16270255 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 23440865 - 23440913
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  23440865 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 48972453 - 48972495
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  48972453 atggtgggaaagaactctcctttcccaaattaaatggcaccta 48972495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 35615812 - 35615767
Alignment:
Q  81 ttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||    
T  35615812 ttcccatggtgggaaagaagtctccttttccaagttaaatgccacc 35615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 37874113 - 37874064
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||| ||||||||||||||||||| |||||||| ||||||| ||||    
T  37874113 gactttcccatggtgggaaagaagtctcatttcccaagttaaatgtcacc 37874064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 43737978 - 43738027
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||| |||||    
T  43737978 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacct 43738027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 193890 - 193850
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  193890 atggtgggaaagaactctcctttcccaaattaaatggcacc 193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 9948887 - 9948935
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| |||||||||| |||||||||| ||||    
T  9948887 actttcccatggtgggaaagaactctcctttcctaaattaaatggcacc 9948935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 48869815 - 48869768
Alignment:
Q  80 tttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||| ||||||| |||||||||||||||||||| ||||||| |||||    
T  48869815 tttcccatggtggaaaagaagtctcctttcccaagttaaatgtcacct 48869768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 1012595 - 1012554
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaa 119  Q
    ||||||| ||||||||||| || |||||||||||||||||||    
T  1012595 actttcccatggtgggaaaaaaatctcctttcccaaattaaa 1012554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 48971742 - 48971705
Alignment:
Q  89 gtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  48971742 gtgggaaagaactctcctttcccaaattaaatgacacc 48971705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 194701 - 194749
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||    
T  194701 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacc 194749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 43737777 - 43737729
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||||||| || ||| ||||||||||||||||| ||||    
T  43737777 actttcccatggtgggaaataactctactttcccaaattaaatggcacc 43737729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 2829 - 2941
Alignment:
Q  8 cgaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctt 107  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||         |||||||| ||||| | |||||||| |||||    
T  2829 cgaaaaaaatagagtgtggatagactataataacaatggtggtactactcaatctaatggataaaaaaagactttcccatggtagaaaagaagtatcctt 2928  T
Q  108 tcccaaattaaat 120  Q
    ||||| |||||||    
T  2929 tcccagattaaat 2941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 2948 - 3060
Alignment:
Q  8 cgaagaaaatatagtgtggatagactataataacaattgtggtactactcaatctaatggtnnnnnnnngactttcctatggtgggaaagaagtctcctt 107  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||         |||||||| ||||| | |||||||| |||||    
T  2948 cgaaaaaaatagagtgtggatagactataataacaatggtggtactactcaatctaatggataaaaaaagactttcccatggtagaaaagaagtatcctt 3047  T
Q  108 tcccaaattaaat 120  Q
    ||||| |||||||    
T  3048 tcccagattaaat 3060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 36475892 - 36475841
Alignment:
Q  13 aaaatatagtgtggatagactataataacaattgtggtactactcaatctaa 64  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36475892 aaaatatagtgtggatagactataataacaatggtggtactactcaatctaa 36475841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 5277326 - 5277380
Alignment:
Q  9 gaagaaaatatagtgtggatagactataataacaattgtggtactactcaatcta 63  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  5277326 gaagaaaatatagtgtggatagactataataacaatggtggtactacttaatcta 5277380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 5276514 - 5276464
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  5276514 gactttcccatggtgggaaagaagtctcctttcccaagttaaatgccacct 5276464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 13134366 - 13134318
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  13134366 actttcctatggtgggaaagaactctcctttcccaaattaaatggcacc 13134318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 42428177 - 42428236
Alignment:
Q  214 ttttcacttttaaagtgcattggaaagtggaaataagtcttcaaaagctaatccaaacac 273  Q
    ||||||| |||||||||||||||||||||||||| || || |||||| ||||||||||||    
T  42428177 ttttcacatttaaagtgcattggaaagtggaaatgaggctccaaaagttaatccaaacac 42428236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 128
Target Start/End: Original strand, 14573999 - 14574049
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| ||||||    
T  14573999 actttcttatggtgggaaagaactctcctttcccaaattaaatggcaccta 14574049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 21471065 - 21471015
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  21471065 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 21471015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 21471954 - 21472002
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  21471954 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 45139738 - 45139690
Alignment:
Q  80 tttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    ||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  45139738 tttcccatgatggaaaagaagtctcctttcccaaattaaatgccaccta 45139690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 41042588 - 41042541
Alignment:
Q  80 tttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  41042588 tttcccatggtgggaaagaagcctcctttctcaaattaaatgccacct 41042541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 37548046 - 37547997
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||| |||||    
T  37548046 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacct 37547997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 4479702 - 4479750
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  4479702 actttcccatggtgagaaagaactctcctttcccaaattaaatggcacc 4479750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 14573309 - 14573261
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||||||| || ||||||||||||||||||||| ||||    
T  14573309 actttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 37157570 - 37157522
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||||||| |||||||||||| | ||||||||||||||||| ||||    
T  37157570 actttcctatgatgggaaagaagtttgctttcccaaattaaatggcacc 37157522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 4478899 - 4478849
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| ||||||    
T  4478899 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcaccta 4478849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 33433159 - 33433201
Alignment:
Q  77 gactttcctatggtgggaaagaagtctcctttcccaaattaaa 119  Q
    |||||||| |||||||||||||| ||||||||| |||||||||    
T  33433159 gactttcccatggtgggaaagaactctcctttctcaaattaaa 33433201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 1164788 - 1164825
Alignment:
Q  90 tgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  1164788 tgggaaagaactctcctttcccaaattaaatggcacct 1164825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 19521917 - 19521966
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| ||| |||||||||||| | ||||||||||||||||| |||||    
T  19521917 actttcccatgatgggaaagaagtttgctttcccaaattaaatggcacct 19521966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 43789477 - 43789428
Alignment:
Q  79 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    |||||| |||||||||||||||| ||| ||||||  ||||||||||||||    
T  43789477 ctttcccatggtgggaaagaagtatccattcccaggttaaatgccaccta 43789428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 5278398 - 5278442
Alignment:
Q  80 tttcctatggtgggaaa-gaagtctcctttcccaaattaaatgcc 123  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||    
T  5278398 tttcctatggtgggaaaagaagtctcttttcccaagttaaatgcc 5278442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 38778902 - 38778852
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  38778902 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 38778852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 41194561 - 41194511
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  41194561 actttcccatggtgggaaagaactctcctttcccaaattaaatggcaccta 41194511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 37468958 - 37468909
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  37468958 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 37468909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 668227 - 668179
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  668227 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 17145670 - 17145622
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  17145670 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 37469005 - 37469053
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  37469005 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 38779563 - 38779611
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||    
T  38779563 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 7677809 - 7677852
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  7677809 actttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 15011429 - 15011366
Alignment:
Q  210 acaattttcacttttaaagtgcattggaaagtggaaataagtcttcaaaagctaatccaaacac 273  Q
    ||||||||||| ||||||||||||||  |||| ||||| || || |||||||||||||||||||    
T  15011429 acaattttcacatttaaagtgcattgagaagttgaaatgagcctccaaaagctaatccaaacac 15011366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 4261596 - 4261645
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||||||||||| |||||||||| |||||||||| |||||    
T  4261596 actttcccatggtgggaaagaactctcctttcctaaattaaatggcacct 4261645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 669103 - 669151
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||||||||||||||| || |||| |||||||||||||||| ||||    
T  669103 actttcctatggtgggaaaaaactctcatttcccaaattaaatggcacc 669151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 7677457 - 7677422
Alignment:
Q  86 atggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    |||||||||||||| |||||||||||||||||||||    
T  7677457 atggtgggaaagaattctcctttcccaaattaaatg 7677422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 42455083 - 42455040
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatg 121  Q
    ||||||| ||||| | ||||||||||||||||||||||||||||    
T  42455083 actttcccatggtagaaaagaagtctcctttcccaaattaaatg 42455040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 37864307 - 37864356
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||||||||||| |||  |||||||||||||||| |||||    
T  37864307 actttcccatggtgggaaagaactcttatttcccaaattaaatggcacct 37864356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 45887981 - 45888030
Alignment:
Q  79 ctttcctatggtgggaaagaagtctcctttcccaaattaaatgccaccta 128  Q
    |||||| ||||||||||| || |  |||||||||||||||||||||||||    
T  45887981 ctttcccatggtgggaaaaaactagcctttcccaaattaaatgccaccta 45888030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 38072291 - 38072339
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||| |||||| |||| |||||||||||||||| ||||    
T  38072291 actttcccatggtggaaaagaactctcatttcccaaattaaatggcacc 38072339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 160 - 209
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacct 127  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||    
T  160 actttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 27269 - 27221
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||| ||||    
T  27269 actttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 27221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 27575 - 27623
Alignment:
Q  78 actttcctatggtgggaaagaagtctcctttcccaaattaaatgccacc 126  Q
    ||||||| ||||||||||| || |||||||| |||||||||||| ||||    
T  27575 actttcccatggtgggaaaaaactctccttttccaaattaaatggcacc 27623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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