View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2968_high_2 (Length: 452)

Name: NF2968_high_2
Description: NF2968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2968_high_2
NF2968_high_2
[»] chr3 (24 HSPs)
chr3 (11-437)||(35253278-35253698)
chr3 (165-300)||(3776530-3776665)
chr3 (176-302)||(37334974-37335100)
chr3 (182-302)||(31708179-31708299)
chr3 (184-300)||(46853476-46853592)
chr3 (165-272)||(27266764-27266871)
chr3 (169-289)||(5406918-5407032)
chr3 (184-286)||(35264367-35264469)
chr3 (194-302)||(31013055-31013163)
chr3 (184-256)||(40147836-40147908)
chr3 (194-302)||(47979369-47979477)
chr3 (197-284)||(41596107-41596194)
chr3 (184-290)||(51285597-51285703)
chr3 (201-288)||(52925577-52925663)
chr3 (193-243)||(30300997-30301047)
chr3 (193-302)||(584733-584842)
chr3 (184-240)||(35058388-35058445)
chr3 (196-245)||(36302222-36302271)
chr3 (184-265)||(38332531-38332612)
chr3 (117-154)||(50321909-50321946)
chr3 (202-302)||(190871-190970)
chr3 (199-243)||(4526174-4526218)
chr3 (199-243)||(37703141-37703185)
chr3 (206-302)||(43965683-43965779)
[»] chr6 (30 HSPs)
chr6 (168-290)||(34620897-34621019)
chr6 (168-290)||(34748334-34748456)
chr6 (165-289)||(1485099-1485223)
chr6 (199-287)||(882728-882816)
chr6 (184-245)||(34027414-34027475)
chr6 (165-245)||(852540-852620)
chr6 (165-274)||(31305815-31305924)
chr6 (182-269)||(4910933-4911020)
chr6 (165-295)||(9505778-9505908)
chr6 (177-245)||(17225872-17225940)
chr6 (196-286)||(24982332-24982422)
chr6 (193-274)||(5724598-5724679)
chr6 (193-274)||(30926747-30926827)
chr6 (210-302)||(3289798-3289889)
chr6 (193-269)||(25195339-25195415)
chr6 (193-245)||(34026616-34026668)
chr6 (183-290)||(434189-434296)
chr6 (253-304)||(7953079-7953130)
chr6 (276-323)||(19601830-19601877)
chr6 (196-269)||(3482085-3482158)
chr6 (202-287)||(7486475-7486560)
chr6 (193-222)||(7952570-7952599)
chr6 (196-265)||(25388116-25388184)
chr6 (170-287)||(34063325-34063442)
chr6 (193-238)||(34898732-34898777)
chr6 (203-275)||(957590-957662)
chr6 (184-243)||(2234542-2234602)
chr6 (292-324)||(10755398-10755430)
chr6 (117-165)||(19601714-19601762)
chr6 (204-240)||(31868070-31868106)
[»] chr7 (22 HSPs)
chr7 (165-301)||(38123607-38123743)
chr7 (182-302)||(40491603-40491723)
chr7 (165-300)||(27571870-27572005)
chr7 (194-286)||(40561714-40561806)
chr7 (193-288)||(45557401-45557496)
chr7 (196-300)||(12306760-12306866)
chr7 (196-287)||(40795944-40796035)
chr7 (201-300)||(17111889-17111988)
chr7 (183-286)||(22310415-22310518)
chr7 (193-245)||(41386812-41386864)
chr7 (193-288)||(25156236-25156331)
chr7 (165-223)||(30182315-30182373)
chr7 (194-274)||(41788353-41788433)
chr7 (193-245)||(42816465-42816517)
chr7 (204-287)||(44570695-44570778)
chr7 (196-243)||(45005059-45005106)
chr7 (204-238)||(19098489-19098523)
chr7 (196-233)||(25935234-25935271)
chr7 (235-300)||(33853426-33853491)
chr7 (117-170)||(38123783-38123836)
chr7 (193-245)||(597943-597995)
chr7 (196-270)||(1411001-1411072)
[»] scaffold0361 (1 HSPs)
scaffold0361 (183-302)||(14054-14173)
[»] chr1 (44 HSPs)
chr1 (165-285)||(48548971-48549089)
chr1 (182-288)||(7524138-7524244)
chr1 (165-242)||(20720824-20720901)
chr1 (165-232)||(3515826-3515893)
chr1 (165-240)||(8381974-8382049)
chr1 (183-302)||(45660546-45660663)
chr1 (199-301)||(9939670-9939771)
chr1 (182-288)||(34915091-34915197)
chr1 (165-274)||(10324906-10325015)
chr1 (202-281)||(1233350-1233429)
chr1 (194-245)||(24587949-24588000)
chr1 (193-270)||(18325080-18325157)
chr1 (193-245)||(213534-213586)
chr1 (212-268)||(5407863-5407919)
chr1 (206-290)||(35961417-35961501)
chr1 (195-287)||(52339683-52339775)
chr1 (182-271)||(26373515-26373601)
chr1 (200-243)||(35548832-35548875)
chr1 (182-256)||(3016187-3016261)
chr1 (182-244)||(6021829-6021891)
chr1 (165-219)||(33693029-33693083)
chr1 (199-256)||(1514385-1514442)
chr1 (165-254)||(11049258-11049347)
chr1 (193-270)||(32370003-32370080)
chr1 (193-268)||(30557540-30557613)
chr1 (193-280)||(39395924-39396016)
chr1 (193-240)||(7790644-7790691)
chr1 (182-241)||(28287337-28287396)
chr1 (200-263)||(52263626-52263689)
chr1 (188-222)||(52013498-52013532)
chr1 (226-271)||(213252-213297)
chr1 (196-245)||(2555940-2555989)
chr1 (204-245)||(27500332-27500373)
chr1 (184-221)||(29759639-29759676)
chr1 (196-245)||(30850396-30850445)
chr1 (251-300)||(40352453-40352502)
chr1 (193-257)||(47053442-47053504)
chr1 (226-302)||(5268288-5268364)
chr1 (230-270)||(12119383-12119423)
chr1 (199-239)||(14515660-14515700)
chr1 (165-245)||(28083885-28083965)
chr1 (197-269)||(38797603-38797674)
chr1 (202-238)||(44392809-44392845)
chr1 (193-245)||(47321904-47321956)
[»] chr2 (21 HSPs)
chr2 (165-289)||(4894110-4894234)
chr2 (193-300)||(1976806-1976915)
chr2 (165-257)||(42982552-42982644)
chr2 (193-269)||(13912823-13912899)
chr2 (194-241)||(37420196-37420243)
chr2 (167-269)||(33019129-33019231)
chr2 (184-290)||(44439281-44439387)
chr2 (204-285)||(680247-680328)
chr2 (182-243)||(42741002-42741063)
chr2 (206-288)||(16518827-16518909)
chr2 (217-286)||(15220817-15220886)
chr2 (176-238)||(16013714-16013776)
chr2 (193-243)||(32596027-32596077)
chr2 (165-223)||(41494090-41494148)
chr2 (194-263)||(8800677-8800746)
chr2 (193-302)||(11759799-11759908)
chr2 (213-322)||(16519500-16519609)
chr2 (202-303)||(32307129-32307230)
chr2 (193-242)||(33502273-33502322)
chr2 (193-246)||(33961977-33962030)
chr2 (199-256)||(44147937-44147994)
[»] chr8 (26 HSPs)
chr8 (165-288)||(32927900-32928023)
chr8 (196-323)||(16971983-16972110)
chr8 (162-302)||(4950489-4950628)
chr8 (182-302)||(26100086-26100206)
chr8 (182-243)||(13384653-13384714)
chr8 (202-270)||(2764441-2764509)
chr8 (182-270)||(35495015-35495103)
chr8 (251-322)||(19649232-19649303)
chr8 (187-265)||(35495290-35495368)
chr8 (199-243)||(32681303-32681347)
chr8 (199-287)||(32736504-32736592)
chr8 (196-287)||(38335816-38335907)
chr8 (165-256)||(4662889-4662980)
chr8 (198-245)||(5859060-5859107)
chr8 (206-245)||(9695437-9695476)
chr8 (194-288)||(18356043-18356135)
chr8 (183-271)||(32767413-32767503)
chr8 (194-302)||(32994180-32994290)
chr8 (209-243)||(10172874-10172908)
chr8 (193-269)||(18355823-18355897)
chr8 (216-269)||(37684464-37684517)
chr8 (187-220)||(39648163-39648196)
chr8 (213-289)||(2778569-2778645)
chr8 (116-152)||(4950381-4950417)
chr8 (204-240)||(35064461-35064497)
chr8 (193-265)||(38868779-38868851)
[»] chr4 (24 HSPs)
chr4 (177-287)||(55927725-55927835)
chr4 (184-273)||(4243414-4243504)
chr4 (167-274)||(32818336-32818445)
chr4 (193-274)||(8604590-8604671)
chr4 (193-270)||(35065099-35065176)
chr4 (182-268)||(21691186-21691272)
chr4 (167-320)||(33843987-33844141)
chr4 (165-256)||(10185202-10185293)
chr4 (199-257)||(26911390-26911448)
chr4 (201-243)||(32100336-32100378)
chr4 (210-300)||(33843764-33843854)
chr4 (193-287)||(41751227-41751321)
chr4 (193-287)||(47144250-47144344)
chr4 (165-302)||(22250234-22250371)
chr4 (192-255)||(16551992-16552053)
chr4 (176-287)||(29904251-29904362)
chr4 (182-245)||(45011899-45011962)
chr4 (193-243)||(9064267-9064317)
chr4 (251-301)||(29468574-29468624)
chr4 (166-231)||(2206354-2206419)
chr4 (202-287)||(22683909-22683994)
chr4 (226-302)||(1023858-1023934)
chr4 (226-302)||(21743086-21743161)
chr4 (165-233)||(37439153-37439221)
[»] chr5 (22 HSPs)
chr5 (165-245)||(36639945-36640025)
chr5 (195-271)||(8591519-8591595)
chr5 (182-300)||(15368498-15368615)
chr5 (193-303)||(41819673-41819783)
chr5 (190-270)||(9184987-9185067)
chr5 (165-300)||(34250296-34250428)
chr5 (205-288)||(35138977-35139060)
chr5 (182-288)||(6951259-6951365)
chr5 (199-245)||(10898763-10898809)
chr5 (194-271)||(37121622-37121699)
chr5 (251-295)||(8121635-8121679)
chr5 (193-245)||(42858144-42858196)
chr5 (164-223)||(24306115-24306174)
chr5 (164-223)||(24367142-24367201)
chr5 (176-301)||(15873930-15874054)
chr5 (209-270)||(32693742-32693803)
chr5 (202-238)||(7925431-7925467)
chr5 (182-245)||(9818759-9818823)
chr5 (202-302)||(11418781-11418879)
chr5 (217-301)||(14671085-14671168)
chr5 (116-152)||(15368139-15368175)
chr5 (193-245)||(33608540-33608592)
[»] scaffold0314 (1 HSPs)
scaffold0314 (176-269)||(17152-17245)
[»] scaffold0024 (1 HSPs)
scaffold0024 (202-241)||(23594-23633)
[»] scaffold0015 (1 HSPs)
scaffold0015 (251-301)||(65538-65588)
[»] scaffold0009 (1 HSPs)
scaffold0009 (252-322)||(199361-199431)


Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 35253698 - 35253278
Alignment:
Q  11 cagagattgaatttctaaacaatgcccctacatgcccttctttttcgtttttatctgtccagttccacttttacacaagtcaaaattgattctagagatg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35253698 cagagattgaatttctaaacaatgcccctacatgcccttctttttcgtttttatctgtccagttccacttttacacaagtcaaaattgattctagagatg 35253599  T
Q  111 tagacatgtttggttccatttttggaggtgccaaaattgatttcagggatgtagacttgaagctggaaatagtagcttctggttctagaattgattttta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35253598 tagacatgtttggttccatttttggaggtgccaaaattgatttcagggatgtagacttgaagctggaaatagtagcttctggttctagaattgattttta 35253499  T
Q  211 cactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaatttttctcaccg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  35253498 cactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagccaaaatcaatttttctcacca 35253399  T
Q  311 cagaaccaaacatgtgttctctatctctagtataattgattttgcctcccaaaatttgtagttttagcctctataattgatttttagtctcgaatttata 410  Q
    |||||||||||||||||      |||  |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35253398 cagaaccaaacatgtgt------tctggagtataattgattttgcctcccgaaatttgtagttttagcctcgataattgatttttagtctcgaatttata 35253305  T
Q  411 gttgaacgcgcttttacatgaacatat 437  Q
    |||||||||||||||||||||||||||    
T  35253304 gttgaacgcgcttttacatgaacatat 35253278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 3776530 - 3776665
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    ||||||| || ||||| |||||||||| |||||||||| |||||||||||||||||| |   | ||||||||||||||| | ||| |||||  |||||||    
T  3776530 acttgaatctagaaattgtagcttctgattctagaattaatttttacactcaaatttgttgctgaactcacttttacatcaatgtatccaagcataaatc 3776629  T
Q  265 actttaccttaaactcaattttagcccaaatcaatt 300  Q
    ||||||| || |||||||||||||||  ||||||||    
T  3776630 actttacattcaactcaattttagccagaatcaatt 3776665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 37335100 - 37334974
Alignment:
Q  176 gaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttacctta 275  Q
    ||||| ||||||| || ||||||||||||||||||||||  |||| ||  ||||||||| ||||| |||| ||| | || | |||||||||||||||||     
T  37335100 gaaatcgtagcttttgattctagaattgatttttacacttgaattcattgttcaactcatttttatatgaatgtattcagacataaatcactttaccttc 37335001  T
Q  276 aactcaattttagcccaaatcaatttt 302  Q
    ||||||||||||| |  ||||||||||    
T  37335000 aactcaattttagtcggaatcaatttt 37334974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 31708299 - 31708179
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactca 281  Q
    ||||||| || |||||||||||||| | |||| ||||||||| ||||||||||||||||||||| ||| |||||| | ||| ||||||| |   ||||||    
T  31708299 gtagcttttgattctagaattgattctaacacacaaatttataattcaactcacttttacatgaatgtatccaaacacaaaccactttatcagcaactca 31708200  T
Q  282 attttagcccaaatcaatttt 302  Q
     |||||| || ||||||||||    
T  31708199 cttttagtcctaatcaatttt 31708179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 46853592 - 46853476
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaat 283  Q
    ||||| || |||||||||||||||| ||||||||||||||  |||||||||||||||||| | | | |||  | ||||||||||||||||| |||| | |    
T  46853592 agcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacataaatatatcctgacataaatcactttaccttcaacttact 46853493  T
Q  284 tttagcccaaatcaatt 300  Q
    | ||||| |||||||||    
T  46853492 tgtagccaaaatcaatt 46853476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 27266871 - 27266764
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    |||||||||| ||||| ||||||  || ||| |||||| ||||||||||||||||||||  ||||||| ||||||||||||   | || ||| |||||||    
T  27266871 acttgaagctagaaattgtagctaatgattcaagaattaatttttacactcaaatttattgttcaactaacttttacatgaaaatatctaaacataaatc 27266772  T
Q  265 actttacc 272  Q
    ||||||||    
T  27266771 actttacc 27266764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 289
Target Start/End: Original strand, 5406918 - 5407032
Alignment:
Q  169 gaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactt 268  Q
    |||||| ||||| |||||||||| || ||||||||||||||| |  ||||||||   ||||| |||||||||||||| ||| |||||| |||    ||||    
T  5406918 gaagctagaaatggtagcttctgattatagaattgatttttaaa--caaatttactcttcaaatcacttttacatgaatgtatccaaacata----actt 5407011  T
Q  269 taccttaaactcaattttagc 289  Q
    |||||| ||||||||||||||    
T  5407012 taccttcaactcaattttagc 5407032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 35264469 - 35264367
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaat 283  Q
    ||||| || |||||||||||||||| ||||| ||||||||  ||||| ||| |||||||||| |||  ||||| |||| ||||||||| || |||||| |    
T  35264469 agcttttgattctagaattgattttaacacttaaatttattgttcaagtcatttttacatgaatgtacccaaacataactcactttactttcaactcact 35264370  T
Q  284 ttt 286  Q
    |||    
T  35264369 ttt 35264367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 302
Target Start/End: Original strand, 31013055 - 31013163
Alignment:
Q  194 tctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaa 293  Q
    ||||||||||||| | |||| ||||||||  ||||||||||||| ||||||| ||  |||||| | ||||||||||| ||  |||||| |||||| |  |    
T  31013055 tctagaattgattctaacacacaaatttagaattcaactcacttgtacatgaatgcatccaaacacaaatcactttatctacaactcacttttagtcgga 31013154  T
Q  294 atcaatttt 302  Q
    |||||||||    
T  31013155 atcaatttt 31013163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 40147908 - 40147836
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaa 256  Q
    ||||| || |||||||||||||||  |||||  ||||||||||||||||||||||||||| | ||| ||||||    
T  40147908 agcttttgattctagaattgatttcaacacttgaatttatcattcaactcacttttacattaatgtatccaaa 40147836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 302
Target Start/End: Original strand, 47979369 - 47979477
Alignment:
Q  194 tctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaa 293  Q
    |||| |||||||||| || |||||||||||  ||| |||||||||||||| | | | || ||||||||| |||||||| || |||||| |||||  | ||    
T  47979369 tctataattgattttaactctcaaatttatttttcgactcacttttacataagtttatctaaatataaaccactttacgtttaactcacttttattcaaa 47979468  T
Q  294 atcaatttt 302  Q
    |||||||||    
T  47979469 atcaatttt 47979477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 284
Target Start/End: Complemental strand, 41596194 - 41596107
Alignment:
Q  197 agaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatt 284  Q
    ||||||||||||||||| ||| |||||  ||  |||||||||| ||||| ||| |||||| | |||||||||||| || |||||||||    
T  41596194 agaattgatttttacacacaagtttatagtttgactcacttttccatgaatgtatccaaacagaaatcactttacattcaactcaatt 41596107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 51285597 - 51285703
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaat 283  Q
    ||||| || ||||||||||||||||| ||||||||||| |  || ||| | ||||||||||| ||| |||||  || ||| ||||||| || |||||| |    
T  51285597 agcttttgattctagaattgatttttgcactcaaatttgttgtttaacccgcttttacatgaatgtatccaagcatgaattactttacattcaactcact 51285696  T
Q  284 tttagcc 290  Q
    |||||||    
T  51285697 tttagcc 51285703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 288
Target Start/End: Complemental strand, 52925663 - 52925577
Alignment:
Q  201 ttgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttag 288  Q
    ||||||||||||||||||| ||| ||| | ||| ||||||||| |  || |||||| ||||| |||||||| || |||||||||||||    
T  52925663 ttgatttttacactcaaatgtattattta-ctcgcttttacattacggtatccaaacataaaccactttactttcaactcaattttag 52925577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 30301047 - 30300997
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    ||||||||||| |||| ||||||||||||||  |||||| |||||||||||    
T  30301047 ttctagaattggttttaacactcaaatttattgttcaacccacttttacat 30300997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 302
Target Start/End: Complemental strand, 584842 - 584733
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagccca 292  Q
    |||| |||||||||||| || ||||||| ||  || | ||||||||||||| | ||| |||||| | |||||  |||| ||| |||| |||||||||  |    
T  584842 ttcttgaattgatttttgcagtcaaattaattgtttagctcacttttacataaatgtatccaaacagaaatccatttagcttcaacttaattttagctaa 584743  T
Q  293 aatcaatttt 302  Q
    ||||||||||    
T  584742 aatcaatttt 584733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 35058388 - 35058445
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaat-ttatcattcaactcactttta 240  Q
    ||||| || |||||||||||||||| |||||||||| ||||  |||||||||||||||    
T  35058388 agcttttgattctagaattgattttaacactcaaatattattgttcaactcactttta 35058445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 36302222 - 36302271
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    |||||||||||||  |||| ||||||||  ||||||||||||||||||||    
T  36302222 tagaattgattttagcacttaaatttattgttcaactcacttttacatga 36302271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 38332612 - 38332531
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatca 265  Q
    |||||||| ||||| ||||| | |||||||||||||||||  ||||||||| || | ||||| ||| | |||| ||||||||    
T  38332612 agcttctgattctaaaattggtatttacactcaaatttattgttcaactcatttatccatgaatgtatacaaacataaatca 38332531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 50321946 - 50321909
Alignment:
Q  117 tgtttggttccatttttggaggtgccaaaattgatttc 154  Q
    |||||||||||||||||||||  |||||||||||||||    
T  50321946 tgtttggttccatttttggagaggccaaaattgatttc 50321909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 190871 - 190970
Alignment:
Q  202 tgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaattt 301  Q
    |||||||| |||||||||||||  ||||||||||||| || ||| ||| ||| ||||||||||| |||   ||||||||| ||| | |  ||||||||||    
T  190871 tgatttttgcactcaaatttattgttcaactcactttcacgtgaatgtatcc-aatataaatcattttgttttaaactcagtttcaactaaaatcaattt 190969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 4526174 - 4526218
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    ||||||||||||||| |||||||||  |||||| |||||||||||    
T  4526174 aattgatttttacacacaaatttatagttcaacacacttttacat 4526218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 243
Target Start/End: Original strand, 37703141 - 37703185
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    |||| ||||||||||||||||||||  ||||| ||||||||||||    
T  37703141 aattaatttttacactcaaatttattgttcaattcacttttacat 37703185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 43965683 - 43965779
Alignment:
Q  206 ttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaatttt 302  Q
    ||||||||||||| ||||  ||||||||| ||| |  ||| ||| | |||| |||||||| ||||||| ||| ||| ||||| | ||||||||||||    
T  43965683 ttttacactcaaaattattgttcaactcattttcaggtgaatgtattcaaagataaatcattttacctaaaattcacttttaacacaaatcaatttt 43965779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 34620897 - 34621019
Alignment:
Q  168 tgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcact 267  Q
    ||||||| |||||  ||||||||| |||||||||||||||||||||| ||||||||  |||||||||||||||||| | ||| |||||| ||||||||||    
T  34620897 tgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcact 34620996  T
Q  268 ttaccttaaactcaattttagcc 290  Q
    ||||||| ||||||||| |||||    
T  34620997 ttaccttcaactcaattctagcc 34621019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 34748334 - 34748456
Alignment:
Q  168 tgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcact 267  Q
    ||||||| |||||  ||||||||| |||||||||||||||||||||| ||||||||  |||||||||||||||||| | ||| |||||| ||||||||||    
T  34748334 tgaagctagaaatcatagcttctgattctagaattgatttttacactaaaatttatttttcaactcacttttacataaatgtatccaaacataaatcact 34748433  T
Q  268 ttaccttaaactcaattttagcc 290  Q
    ||||||| ||||||||| |||||    
T  34748434 ttaccttcaactcaattctagcc 34748456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 289
Target Start/End: Complemental strand, 1485223 - 1485099
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    ||||||| || ||||| | ||||| || |||||||||||||||| ||||||||||||||  |||||||||||||||||| | ||| ||||||  ||||||    
T  1485223 acttgaatctagaaattggagcttttgattctagaattgattttaacactcaaatttattgttcaactcacttttacataagtgtatccaaacgtaaatc 1485124  T
Q  265 actttaccttaaactcaattttagc 289  Q
    |||  || ||||||||| |||||||    
T  1485123 actcaactttaaactcacttttagc 1485099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 882728 - 882816
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttta 287  Q
    |||||||||||||| ||||||||||  || ||||||||||| ||||| ||| |||||| |||||||| |||||||| ||||||||||||    
T  882728 aattgatttttacattcaaatttattgtttaactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaatttta 882816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 184 - 245
Target Start/End: Complemental strand, 34027475 - 34027414
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  34027475 agcttttgattctagaattgatttttacactcaaatttattattcaactcactcttacatga 34027414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 852540 - 852620
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    |||||||||| ||||| |||| ||||| ||||||||||||||||||||| ||||| |||  || |||||||||||||||||    
T  852540 acttgaagctagaaattgtaggttctgattctagaattgatttttacacccaaatgtattgtttaactcacttttacatga 852620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 31305924 - 31305815
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    ||||||||||  |||| | ||||| || ||||||||||||||| |||||||||||||||   ||||||||||||||||| | | | |||||| ||||||     
T  31305924 acttgaagctaaaaattggagcttttgattctagaattgatttatacactcaaatttattgatcaactcacttttacattaatatatccaaacataaatg 31305825  T
Q  265 actttacctt 274  Q
    | ||||||||    
T  31305824 attttacctt 31305815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 4910933 - 4911020
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttt 269  Q
    ||||||| || |||||||||||||||| |||  |||||||||  ||| |||||||||||||| | ||| |||||| ||||||||||||    
T  4910933 gtagcttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatccaaacataaatcacttt 4911020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 165 - 295
Target Start/End: Original strand, 9505778 - 9505908
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    |||||||| | ||||| | ||||| || |||||  ||||||||||| ||||||||||||  |||||| ||||||||||||| | | |   || ||| |||    
T  9505778 acttgaagatagaaattggagcttttgattctatgattgatttttaaactcaaatttattgttcaacacacttttacatgaatatataataacatatatc 9505877  T
Q  265 actttaccttaaactcaattttagcccaaat 295  Q
    ||||| |||| ||||||||||||||| ||||    
T  9505878 actttgccttcaactcaattttagccaaaat 9505908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 17225872 - 17225940
Alignment:
Q  177 aaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    |||| ||||||| || ||||||||||||||||||||  |||||||||  ||||||||| ||||||||||    
T  17225872 aaattgtagcttttgattctagaattgatttttacatacaaatttatagttcaactcagttttacatga 17225940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 286
Target Start/End: Original strand, 24982332 - 24982422
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttt 286  Q
    ||||| |||||||||||||||||||| |  ||||||| |||||||||||| ||| | ||||  || ||||| ||| ||| |||||||||||    
T  24982332 tagaactgatttttacactcaaattttttgttcaacttacttttacatgaatgtatacaaacttacatcaccttaacttcaactcaatttt 24982422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 5724679 - 5724598
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttacctt 274  Q
    ||||| ||||||||||||||| ||||| ||||||| |||||||||||| ||||   | | |||| | |||||||||||||||    
T  5724679 ttctataattgatttttacacacaaatatatcatttaactcacttttatatgaacatattcaaacacaaatcactttacctt 5724598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 30926827 - 30926747
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttacctt 274  Q
    |||||||||||||||||||||||||||||||  ||||| | |||||| ||||| | | | |||| |||||||| ||||||||    
T  30926827 ttctagaattgatttttacactcaaatttattgttcaa-ttacttttgcatgaatatattcaaacataaatcattttacctt 30926747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 3289798 - 3289889
Alignment:
Q  210 acactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaatttt 302  Q
    |||| ||||||||| ||||||||||||||||||| | ||| |||||| | ||||||||||| ||  |||||| ||| || | |||||||||||    
T  3289798 acacacaaatttataattcaactcacttttacat-aatgtatccaaacacaaatcactttatctgcaactcactttaagtcgaaatcaatttt 3289889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 25195415 - 25195339
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttt 269  Q
    ||||| |||||||||| | || ||||||||  ||||||||||||||||||| | ||| |||||| | ||||||||||    
T  25195415 ttctataattgattttcatacacaaatttacaattcaactcacttttacataaatgtatccaaacacaaatcacttt 25195339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 34026668 - 34026616
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||| |||||||||||||||| ||||| || |||||||||| ||||||||||    
T  34026668 ttctacaattgatttttacacttaaattaattattcaactcatttttacatga 34026616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 290
Target Start/End: Complemental strand, 434296 - 434189
Alignment:
Q  183 tagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaa 282  Q
    |||||| || || ||||||||||||||| ||  |||||||   ||||||||||||||||| || | | |||||| | |||||| |||||||  ||||||     
T  434296 tagcttttgattttagaattgatttttatacataaatttaaatttcaactcacttttacacgaatatatccaaacacaaatcattttacctgcaactcac 434197  T
Q  283 ttttagcc 290  Q
    ||||||||    
T  434196 ttttagcc 434189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 7953079 - 7953130
Alignment:
Q  253 caaatataaatcactttaccttaaactcaattttagcccaaatcaatttttc 304  Q
    |||| ||||||||||||||||| ||||||||||| |||  ||||||||||||    
T  7953079 caaacataaatcactttaccttcaactcaattttggccagaatcaatttttc 7953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Original strand, 19601830 - 19601877
Alignment:
Q  276 aactcaattttagcccaaatcaatttttctcaccgcagaaccaaacat 323  Q
    |||||||||||||||  |||||||||||||||| ||||||| ||||||    
T  19601830 aactcaattttagccagaatcaatttttctcacagcagaacaaaacat 19601877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 3482085 - 3482158
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttt 269  Q
    ||||||||||||| |||| ||| |||||  ||||||| |||||||||||| ||| | |||| | ||||||||||    
T  3482085 tagaattgattttcacacacaagtttatagttcaacttacttttacatgaatgtattcaaacacaaatcacttt 3482158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 7486475 - 7486560
Alignment:
Q  202 tgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttta 287  Q
    ||||||||||||| |||||  |  ||||| ||||||| ||||||   | |||||| |||||||| ||||||||||||||| |||||    
T  7486475 tgatttttacacttaaattgtttgttcaattcactttcacatgaacttatccaaacataaatcattttaccttaaactcactttta 7486560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 222
Target Start/End: Original strand, 7952570 - 7952599
Alignment:
Q  193 ttctagaattgatttttacactcaaattta 222  Q
    ||||||||||||||||||||||||||||||    
T  7952570 ttctagaattgatttttacactcaaattta 7952599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 25388116 - 25388184
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatca 265  Q
    ||||||||||||| ||||||||||||||   ||||||||||||||||| | | | ||||||| |||||||    
T  25388116 tagaattgattttgacactcaaatttat-tgtcaactcacttttacataaatatatccaaatgtaaatca 25388184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 34063325 - 34063442
Alignment:
Q  170 aagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttt 269  Q
    ||||| ||||| |||| ||||  |||||||||| | ||||||| ||||| ||||  || ||| ||||||||||| | | |  ||||| ||||||||||||    
T  34063325 aagctagaaattgtaggttctcattctagaattaacttttacaatcaaacttattgttaaacccacttttacataaatataaccaaacataaatcacttt 34063424  T
Q  270 accttaaactcaatttta 287  Q
    | ||| ||| ||||||||    
T  34063425 agcttcaacccaatttta 34063442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 34898732 - 34898777
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttt 238  Q
    |||||||||||||||| |||||| |||||||  |||||||||||||    
T  34898732 ttctagaattgattttaacactcgaatttattgttcaactcacttt 34898777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 275
Target Start/End: Complemental strand, 957662 - 957590
Alignment:
Q  203 gatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttacctta 275  Q
    ||||||||||| |||| |||  ||| |||||| |||||||||| ||| |||||| |||||||| |||| ||||    
T  957662 gatttttacacacaaacttaaaatttaactcatttttacatgaatgtatccaaacataaatcattttatctta 957590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 2234542 - 2234602
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaattta-tcattcaactcacttttacat 243  Q
    ||||| || |||||||||||||||| ||||||||||||| |  ||||||||||| ||||||    
T  2234542 agcttttgattctagaattgattttaacactcaaatttatttgttcaactcactattacat 2234602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 324
Target Start/End: Complemental strand, 10755430 - 10755398
Alignment:
Q  292 aaatcaatttttctcaccgcagaaccaaacatg 324  Q
    |||||||||||| ||||||||||||||||||||    
T  10755430 aaatcaatttttgtcaccgcagaaccaaacatg 10755398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 19601714 - 19601762
Alignment:
Q  117 tgtttggttccatttttggaggtgccaaaattgatttcagggatgtaga 165  Q
    |||||||||||| ||||||||| | ||||||||||| ||| ||||||||    
T  19601714 tgtttggttccacttttggaggagtcaaaattgattccagagatgtaga 19601762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 31868070 - 31868106
Alignment:
Q  204 atttttacactcaaatttatcattcaactcactttta 240  Q
    ||||||||||||||||||||  |||||||||||||||    
T  31868070 atttttacactcaaatttatttttcaactcactttta 31868106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 165 - 301
Target Start/End: Complemental strand, 38123743 - 38123607
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    |||||||||| ||||| |||||||||  |||||||||||||||||||||||||||||||   ||||||||||||||||||| ||| ||| || | ||||     
T  38123743 acttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcacttttacatgaatgtgtccgaacacaaatt 38123644  T
Q  265 actttaccttaaactcaattttagcccaaatcaattt 301  Q
    |||||||||| ||||||||||||| |  |||||||||    
T  38123643 actttaccttcaactcaattttagtcataatcaattt 38123607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 40491603 - 40491723
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactca 281  Q
    ||||||| || |||||||||||| |||||||| ||||||||   || ||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||    
T  40491603 gtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactca 40491702  T
Q  282 attttagcccaaatcaatttt 302  Q
     |||||| | |||||||||||    
T  40491703 cttttagtcaaaatcaatttt 40491723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 27571870 - 27572005
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    |||||||| | ||||| | ||||| || |||||||||||||||| |||||||| ||||| ||||||||||| ||||||| | ||| |||||  |||||||    
T  27571870 acttgaagttagaaattggagcttttgattctagaattgattttaacactcaagtttattattcaactcacatttacataaatgtatccaaccataaatc 27571969  T
Q  265 actttaccttaaactcaattttagcccaaatcaatt 300  Q
    | |||||||| |||||| ||||||||  ||||||||    
T  27571970 attttacctttaactcacttttagccataatcaatt 27572005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 40561806 - 40561714
Alignment:
Q  194 tctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttt 286  Q
    ||||||||| |||| ||||||||||| |||  |||||||||||||||||||| ||| |||||| |||||||||||||| || |||||||||||    
T  40561806 tctagaattaatttatacactcaaatatattgttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttt 40561714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 45557401 - 45557496
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttag 288  Q
    |||||| |||||||||||||| ||||||| |   ||||||||||||||||||| ||| |||||| | ||||||||||||||| |||||| ||||||    
T  45557401 ttctaggattgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcacttttag 45557496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 12306760 - 12306866
Alignment:
Q  196 tagaattgatttttacactcaaatt---tatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagccca 292  Q
    |||||||||||||||||||||||||   ||| ||||||||||||||||||||| | |  ||||| ||||||||||||| ||| |||||| ||||||||      
T  12306760 tagaattgatttttacactcaaattcactat-attcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcacttttagccag 12306858  T
Q  293 aatcaatt 300  Q
    ||||||||    
T  12306859 aatcaatt 12306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 40796035 - 40795944
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttta 287  Q
    ||||||||||||| |||||||||||||  |||||| |||||||||||||| ||| |||||  ||||| ||||||||||| || ||| |||||    
T  40796035 tagaattgattttaacactcaaatttactattcaaatcacttttacatgaatgtatccaatcataaaccactttaccttcaattcattttta 40795944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 17111889 - 17111988
Alignment:
Q  201 ttgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaatt 300  Q
    |||||| |||||| ||||||||| |||| ||||| |||||||||| ||  |||||| | ||||||||||||||  || |||||||||| | |||||||||    
T  17111889 ttgattcttacacacaaatttataattctactcatttttacatgaatgcatccaaacacaaatcactttacctacaattcaattttagtcaaaatcaatt 17111988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 286
Target Start/End: Complemental strand, 22310518 - 22310415
Alignment:
Q  183 tagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaa 282  Q
    ||||||||  |||||||||| ||||||||||| ||||||||  ||||| ||||||||||  || ||| |||||| |||||||  |||| ||| |||||||    
T  22310518 tagcttctaattctagaattaatttttacacttaaatttatttttcaattcacttttacgagaatgtatccaaacataaatctttttatcttcaactcaa 22310419  T
Q  283 tttt 286  Q
    ||||    
T  22310418 tttt 22310415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 41386864 - 41386812
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||||||| |||||    
T  41386864 ttctagaattgatatttacacacaaatttataattcaactcacttttgcatga 41386812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 288
Target Start/End: Original strand, 25156236 - 25156331
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttag 288  Q
    |||||||||||||||||||||  ||||| || | |||||||||||||| |||| ||| | |||| | |||||| |||| ||| |||||| ||||||    
T  25156236 ttctagaattgatttttacacataaattaataaatcaactcacttttatatgaatgtattcaaacacaaatcattttatcttcaactcatttttag 25156331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 30182373 - 30182315
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttat 223  Q
    ||||||||||  |||| ||||||| || |||||||||| ||||||||||||||||||||    
T  30182373 acttgaagctaaaaattgtagcttttgattctagaattaatttttacactcaaatttat 30182315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 41788353 - 41788433
Alignment:
Q  194 tctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttacctt 274  Q
    |||| |||||||||| ||||||||||||    ||||||||||||||| || | ||| | |||| |||||||||||||||||    
T  41788353 tctataattgattttaacactcaaatttgctgttcaactcacttttatattaatgtatacaaacataaatcactttacctt 41788433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 42816517 - 42816465
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    |||||||||||||||| |||| ||||||||| |||||| |||||| |||||||    
T  42816517 ttctagaattgattttcacacacaaatttataattcaattcacttctacatga 42816465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 287
Target Start/End: Complemental strand, 44570778 - 44570695
Alignment:
Q  204 atttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttta 287  Q
    ||||||||| ||||||||||   |||||||||||||| |||| | |   |||| |||||||||||||| || ||||||||||||    
T  44570778 atttttacattcaaatttatttatcaactcacttttatatgaatataatcaaacataaatcactttacattcaactcaatttta 44570695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 45005059 - 45005106
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    |||||||||| ||  ||||||||||||| |||||||||||||||||||    
T  45005059 tagaattgatcttagcactcaaatttattattcaactcacttttacat 45005106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 19098523 - 19098489
Alignment:
Q  204 atttttacactcaaatttatcattcaactcacttt 238  Q
    ||||||||||||||||||||||||||||| |||||    
T  19098523 atttttacactcaaatttatcattcaactaacttt 19098489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 25935271 - 25935234
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactc 233  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  25935271 tagaattgatttttacactctaatttattattcaactc 25935234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 33853491 - 33853426
Alignment:
Q  235 cttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaatt 300  Q
    ||||||||||| ||| |||||| ||||||||||||| ||| |||||| | ||||||  ||||||||    
T  33853491 cttttacatgaatgtatccaaacataaatcactttagcttcaactcactcttagccagaatcaatt 33853426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 38123836 - 38123783
Alignment:
Q  117 tgtttggttccatttttggaggtgccaaaattgatttcagggatgtagacttga 170  Q
    |||||||||||| ||||||||| |||||||||||||  || |||||||| ||||    
T  38123836 tgtttggttccacttttggaggagccaaaattgattctagagatgtagaattga 38123783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 597995 - 597943
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||| |||||||| || |||| ||||||||  ||||||||||||||||||||    
T  597995 ttctataattgattcttgcactaaaatttattgttcaactcacttttacatga 597943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 270
Target Start/End: Original strand, 1411001 - 1411072
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttta 270  Q
    ||||||||||||| |||| ||||||||  |||||||||||   ||||||| ||| | ||||||||||||| ||||    
T  1411001 tagaattgattttcacacgcaaatttacaattcaactcac---tacatgaatgtgttcaaatataaatcatttta 1411072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 183 - 302
Target Start/End: Complemental strand, 14173 - 14054
Alignment:
Q  183 tagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaa 282  Q
    |||||| || |||||||||||||||||||||||||||||||  ||||||||||||| |||||| ||| |||||| ||||||||||||||||| |||||||    
T  14173 tagcttatgattctagaattgatttttacactcaaatttatttttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactcaa 14074  T
Q  283 ttttagcccaaatcaatttt 302  Q
    || ||||   ||||||||||    
T  14073 ttgtagcaagaatcaatttt 14054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 285
Target Start/End: Complemental strand, 48549089 - 48548971
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    |||||||||| ||||| |||||||||| |||||||||||||||||| ||||  ||||||  |||||||||||||||||| | ||| || ||| |||||||    
T  48549089 acttgaagctagaaattgtagcttctgattctagaattgatttttaaactc--atttattgttcaactcacttttacataaatgtatcaaaacataaatc 48548992  T
Q  265 actttaccttaaactcaattt 285  Q
    | |||||||| ||||||||||    
T  48548991 attttaccttcaactcaattt 48548971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 7524138 - 7524244
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactca 281  Q
    ||||||| || || |||||||||||||||||| |||||||||  |||||||||||||||||| | ||| |||||| | ||||||||||||||| | ||||    
T  7524138 gtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaaacacaaatcactttaccttgagctca 7524237  T
Q  282 attttag 288  Q
     ||||||    
T  7524238 cttttag 7524244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 20720824 - 20720901
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttaca 242  Q
    ||||||| || ||||| ||| ||| || |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  20720824 acttgaatctagaaattgtaacttatgattctagaattgatttttacaatcaaatttatccttcaactcacttttaca 20720901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 3515826 - 3515893
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaact 232  Q
    |||||||||| ||||| ||||||| |  |||||||||||||||||||||||||| |||||||||||||    
T  3515826 acttgaagctagaaattgtagcttttcattctagaattgatttttacactcaaaattatcattcaact 3515893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 8381974 - 8382049
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcactttta 240  Q
    |||||||||| ||||| ||||| ||| ||||||||||||||||||||| |||| |||||  |||||||||||||||    
T  8381974 acttgaagctagaaattgtagcctctagttctagaattgatttttacattcaagtttattgttcaactcactttta 8382049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 302
Target Start/End: Complemental strand, 45660663 - 45660546
Alignment:
Q  183 tagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaa 282  Q
    |||||| |||||||| ||||||||||||||| ||||| ||  |||||||| |||||||||||| | | |||||| |||||||||| || ||| ||||||     
T  45660663 tagcttttggttcta-aattgatttttacacacaaatctacaattcaacttacttttacatgagtttatccaaacataaatcactcta-ctttaactcac 45660566  T
Q  283 ttttagcccaaatcaatttt 302  Q
    |||||| | |||||||||||    
T  45660565 ttttagtcaaaatcaatttt 45660546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 9939771 - 9939670
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaa 298  Q
    |||||| |||||||||||||||||| ||||||||||| |||||||||  || || | | ||||||||||||||| | | ||||| ||||||| |||||||    
T  9939771 aattgaattttacactcaaatttattattcaactcac-tttacatgaacgtatctagacataaatcactttaccattagctcaactttagccaaaatcaa 9939673  T
Q  299 ttt 301  Q
    |||    
T  9939672 ttt 9939670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 34915091 - 34915197
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactca 281  Q
    ||||||| || |||||||||||||| | |||| | | ||||| ||||||||||||||||||||| ||| | |||| |||||||| |||||||  ||||||    
T  34915091 gtagcttttgattctagaattgattctaacacaccattttataattcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactca 34915190  T
Q  282 attttag 288  Q
     ||||||    
T  34915191 cttttag 34915197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 10325015 - 10324906
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    |||||||| | ||||| ||||||| || ||||| |||||||||||||||||||||||||  ||  |||||||||||||| | ||| |||| | | | |||    
T  10325015 acttgaagatagaaattgtagcttttgattctataattgatttttacactcaaatttattgttatactcacttttacattaatgtatccatacacatatc 10324916  T
Q  265 actttacctt 274  Q
    ||||||||||    
T  10324915 actttacctt 10324906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 1233350 - 1233429
Alignment:
Q  202 tgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactca 281  Q
    ||||||||||||||||||||||  || |||||||||| |||||| ||| || ||| |||||| | |||||||||||||||    
T  1233350 tgatttttacactcaaatttattgttgaactcactttcacatgaatgtatctaaacataaattattttaccttaaactca 1233429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 245
Target Start/End: Original strand, 24587949 - 24588000
Alignment:
Q  194 tctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    |||| |||||||||| |||||||||||||| |||||||||||||||||||||    
T  24587949 tctataattgattttaacactcaaatttattattcaactcacttttacatga 24588000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 18325157 - 18325080
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttta 270  Q
    ||||| ||||||||||||  |||| |||||| ||||||| ||||||||||||| ||| |||| | |||||||||||||    
T  18325157 ttctacaattgatttttatcctcagatttattattcaacccacttttacatgaatgtatccatacataaatcacttta 18325080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 213586 - 213534
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    |||||||||||||||||| |||||||||| |  ||||||||||||||||||||    
T  213586 ttctagaattgatttttaaactcaaatttgttgttcaactcacttttacatga 213534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 5407863 - 5407919
Alignment:
Q  212 actcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactt 268  Q
    ||||||||||||||||||| ||||||||||||||   |||||||| |||||||||||    
T  5407863 actcaaatttatcattcaaatcacttttacatgaacctttccaaacataaatcactt 5407919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 35961417 - 35961501
Alignment:
Q  206 ttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcc 290  Q
    ||||| || ||||||||  ||||||||||||||||||||| ||| |  ||| |||||||| |||||||| |||||| ||||||||    
T  35961417 ttttatacacaaatttaaaattcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcacttttagcc 35961501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 52339775 - 52339683
Alignment:
Q  195 ctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttta 287  Q
    |||||||||| ||||| ||||||||||||  ||||| |||| |||||| || ||| |  |||||||||| | |||||||| ||||||||||||    
T  52339775 ctagaattgagttttatactcaaatttattgttcaagtcacatttacacgaatgtatataaatataaataattttaccttcaactcaatttta 52339683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 26373601 - 26373515
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttac 271  Q
    ||||||| || ||||||||||||||||   || ||||||||  ||||| ||||||||||||||| ||| | ||| |||||||||||||||    
T  26373601 gtagcttttgattctagaattgatttt---acacaaatttaaaattcatctcacttttacatgaatgtatacaagtataaatcactttac 26373515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 35548832 - 35548875
Alignment:
Q  200 attgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||    
T  35548832 attgattttaacacttaaatttatcattcaactcacttttacat 35548875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Original strand, 3016187 - 3016261
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaa 256  Q
    ||||||| || ||||||||||||| |||||||  |||||||   |||||||||||||||||||| ||| ||||||    
T  3016187 gtagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttacatgaatgtatccaaa 3016261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 6021829 - 6021891
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatg 244  Q
    ||||||| || ||||| ||| ||||||||||||||| |||||  |||||||||||||||||||    
T  6021829 gtagcttttgattctataatagatttttacactcaagtttatggttcaactcacttttacatg 6021891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 33693029 - 33693083
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaat 219  Q
    |||||||||| ||||| ||||||| || ||||| |||||||||||||||||||||    
T  33693029 acttgaagctagaaattgtagcttttgattctataattgatttttacactcaaat 33693083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 256
Target Start/End: Original strand, 1514385 - 1514442
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaa 256  Q
    ||||||||||||||| |||||||||  ||||||||| |||||||||| ||| ||||||    
T  1514385 aattgatttttacacacaaatttattgttcaactcatttttacatgaatgtatccaaa 1514442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 11049258 - 11049347
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttcca 254  Q
    |||||||||| | | | ||||||| || ||||| ||||||||||||||| |||||||||  ||||| |||||||||| ||| ||| ||||    
T  11049258 acttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttacgtgaatgtatcca 11049347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 270
Target Start/End: Complemental strand, 32370080 - 32370003
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttta 270  Q
    ||||||||||  ||||||||| ||||||||| ||| ||||  ||||||||||| ||| |||||| | |||||||||||    
T  32370080 ttctagaattattttttacacacaaatttataattgaacttgcttttacatgaatgtatccaaacacaaatcacttta 32370003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 30557540 - 30557613
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactt 268  Q
    |||||||||||||||| ||||  ||||||||  ||||||||||||||| |||| ||| |||||| | |||||||||    
T  30557540 ttctagaattgattttcacac--aaatttatagttcaactcacttttatatgaatgtatccaaacacaaatcactt 30557613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 39395924 - 39396016
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttac-----atgattgtttccaaatataaatcactttaccttaaactc 280  Q
    |||||||||| ||||||||||||||||||||  ||| ||||| ||||||     |||| | | ||||||||||||| |||||||||| |||||    
T  39395924 ttctagaattaatttttacactcaaatttattgttcgactcatttttacatggaatgaatatatccaaatataaattactttaccttcaactc 39396016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 7790691 - 7790644
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcactttta 240  Q
    ||||| ||||||||||||||| |||||||||  |||||||||||||||    
T  7790691 ttctataattgatttttacacacaaatttattgttcaactcactttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 28287396 - 28287337
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttac 241  Q
    ||||||| || || ||||||||||||| ||||||||||||||  ||||||| ||||||||    
T  28287396 gtagcttttgattttagaattgattttaacactcaaatttattgttcaactaacttttac 28287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 52263689 - 52263626
Alignment:
Q  200 attgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaat 263  Q
    ||||||||||||||||||||||||  || |||||| |||||||| | ||| |||||| ||||||    
T  52263689 attgatttttacactcaaatttattgtttaactcagttttacattaatgtatccaaacataaat 52263626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 52013532 - 52013498
Alignment:
Q  188 tctggttctagaattgatttttacactcaaattta 222  Q
    |||| ||||||||||||||||||||||||||||||    
T  52013532 tctgattctagaattgatttttacactcaaattta 52013498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 213297 - 213252
Alignment:
Q  226 ttcaactcacttttacatgattgtttccaaatataaatcactttac 271  Q
    |||||||||||||||||||  ||| |||||| ||||||||||||||    
T  213297 ttcaactcacttttacatgcatgtatccaaacataaatcactttac 213252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 2555940 - 2555989
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||||||||| | |||  ||||||||| |||||||||||||||||||||    
T  2555940 tagaattgattctaacatacaaatttataattcaactcacttttacatga 2555989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 27500332 - 27500373
Alignment:
Q  204 atttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||||||||||||||||||  ||||||||| ||||||||||    
T  27500332 atttttacactcaaatttattgttcaactcatttttacatga 27500373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 29759639 - 29759676
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaattt 221  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  29759639 agcttctgattctataattgatttttacactcaaattt 29759676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 30850445 - 30850396
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||||||||||| |||  |||||||||  ||||||||||||||||||||    
T  30850445 tagaattgattttaacatacaaatttatagttcaactcacttttacatga 30850396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 40352453 - 40352502
Alignment:
Q  251 tccaaatataaatcactttaccttaaactcaattttagcccaaatcaatt 300  Q
    |||||| |||||||||||||| ||||||||| ||||| || |||||||||    
T  40352453 tccaaacataaatcactttacattaaactcacttttaaccaaaatcaatt 40352502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 47053442 - 47053504
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaat 257  Q
    |||||||||||| |||||||||||  |||||  || ||||||||||||||||| ||| |||||||    
T  47053442 ttctagaattgaattttacactca--tttatagtttaactcacttttacatgaatgtatccaaat 47053504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 5268288 - 5268364
Alignment:
Q  226 ttcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaatttt 302  Q
    |||||||||||||||||||| | | | |||| | |||||||||||| || |||||| |||||| |  ||||||||||    
T  5268288 ttcaactcacttttacatgaatatattcaaacaaaaatcactttacattcaactcacttttaggcagaatcaatttt 5268364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 12119383 - 12119423
Alignment:
Q  230 actcacttttacatgattgtttccaaatataaatcacttta 270  Q
    |||||||||||||||||||  |||||| |||||||||||||    
T  12119383 actcacttttacatgattgaatccaaacataaatcacttta 12119423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 14515700 - 14515660
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcactttt 239  Q
    |||||||||||||||| ||||| || |||||||||||||||    
T  14515700 aattgatttttacacttaaattaattattcaactcactttt 14515660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 28083965 - 28083885
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    |||||||||| ||| | ||||||| || ||||| |||| |||||||||| |||||||    |||| |||||||||||||||    
T  28083965 acttgaagctagaatttgtagcttttgattctataattaatttttacacacaaatttcaagttcagctcacttttacatga 28083885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 38797674 - 38797603
Alignment:
Q  197 agaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttt 269  Q
    |||||||||||| |||| |||||||||  ||||||||||||||| || | ||| | |||| ||||||||||||    
T  38797674 agaattgattttcacacacaaatttatagttcaactcacttttaaat-aatgtatgcaaacataaatcacttt 38797603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 44392809 - 44392845
Alignment:
Q  202 tgatttttacactcaaatttatcattcaactcacttt 238  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  44392809 tgatttttacactcaattttattattcaactcacttt 44392845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 47321956 - 47321904
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    |||||||||||||||| | || |||||||||  ||||| ||||||||||||||    
T  47321956 ttctagaattgattttcatacacaaatttatagttcaattcacttttacatga 47321904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 289
Target Start/End: Complemental strand, 4894234 - 4894110
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    ||||||| || ||||| ||||||| || ||||| |||||||| ||| |||||||||||| |||||| ||||||||| |||| ||| || ||| |||||||    
T  4894234 acttgaaactagaaatcgtagcttttgattctataattgattattatactcaaatttattattcaagtcacttttaaatgaatgtatctaaacataaatc 4894135  T
Q  265 actttaccttaaactcaattttagc 289  Q
    |||||||||| |||| |||||||||    
T  4894134 actttaccttcaacttaattttagc 4894110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 193 - 300
Target Start/End: Complemental strand, 1976915 - 1976806
Alignment:
Q  193 ttctagaattgattttt--acactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcc 290  Q
    |||||||||||||||||  ||||||||||||||  || ||||||||||||||||| ||| |||||| |||| || ||||||||| ||||||||| |||||    
T  1976915 ttctagaattgatttttttacactcaaatttattgttgaactcacttttacatgaatgtatccaaacataagtcgctttaccttcaactcaattctagcc 1976816  T
Q  291 caaatcaatt 300  Q
      ||||||||    
T  1976815 agaatcaatt 1976806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 42982552 - 42982644
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaat 257  Q
    |||||||||| ||||| ||||||| || ||| ||||||||||||||||| |||||||||  | |||||||||||||||||| ||| |||||||    
T  42982552 acttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttattttacaactcacttttacatgaatgtatccaaat 42982644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 13912823 - 13912899
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttt 269  Q
    |||||||||| |||||||||| |||||||| | ||||||||| |||||||||||||| |||||| | ||||||||||    
T  13912823 ttctagaattaatttttacacacaaatttaccgttcaactcatttttacatgattgtatccaaacacaaatcacttt 13912899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 37420243 - 37420196
Alignment:
Q  194 tctagaattgatttttacactcaaatttatcattcaactcacttttac 241  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  37420243 tctagaattgatttttacactcaaatttattattcaactcacttttac 37420196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 269
Target Start/End: Complemental strand, 33019231 - 33019129
Alignment:
Q  167 ttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcac 266  Q
    |||||||| ||| | ||||||| ||||| ||||||||||||| ||||  ||||||||  |||||||||||||||||||| ||  |||||| | |||||||    
T  33019231 ttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcacttttacatgaatgcatccaaacacaaatcac 33019132  T
Q  267 ttt 269  Q
    |||    
T  33019131 ttt 33019129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 44439281 - 44439387
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaat 283  Q
    ||||| || ||||| |||||||||| ||||||||||||||  |||||||||||||||||| |   | |||||| |||||||||||||| || |||||| |    
T  44439281 agcttttgattctaaaattgattttaacactcaaatttattgttcaactcacttttacataaacatatccaaacataaatcactttacatttaactcact 44439380  T
Q  284 tttagcc 290  Q
    | |||||    
T  44439381 tatagcc 44439387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 680328 - 680247
Alignment:
Q  204 atttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattt 285  Q
    ||||||||||| |||||||  ||||||||||||||||||||| ||| | |||| | ||| ||||||||||| ||||||||||    
T  680328 atttttacactaaaatttagaattcaactcacttttacatgaatgtatgcaaacacaaaacactttaccttcaactcaattt 680247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 42741002 - 42741063
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    ||||||| || ||||||||||||||||||||||||||||||   | ||||||||||||||||    
T  42741002 gtagcttttgattctagaattgatttttacactcaaatttactgtccaactcacttttacat 42741063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 288
Target Start/End: Original strand, 16518827 - 16518909
Alignment:
Q  206 ttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttag 288  Q
    |||||| | |||||||||  |||||||||||||||||||| ||| |||||| | |||||| |||||| | |||||| ||||||    
T  16518827 ttttacgcacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcacttttag 16518909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 15220886 - 15220817
Alignment:
Q  217 aatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttt 286  Q
    |||||||  ||||||||||||| |||||| ||| |||||| |||||||||||||| || |||||| ||||    
T  15220886 aatttattgttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcactttt 15220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 16013776 - 16013714
Alignment:
Q  176 gaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttt 238  Q
    ||||| ||| |||||  |||||||| ||||||||||||||||||||||   ||||||||||||    
T  16013776 gaaattgtaacttctaattctagaaatgatttttacactcaaatttattggtcaactcacttt 16013714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 32596027 - 32596077
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    ||||| ||||||||||||||  |||||| || |||||||||||||||||||    
T  32596027 ttctaaaattgatttttacatacaaattcataattcaactcacttttacat 32596077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 41494148 - 41494090
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttat 223  Q
    |||| |||||| |||| |||||||||| || || |||||||||||||||| ||||||||    
T  41494148 actttaagctgaaaattgtagcttctgattttataattgatttttacacttaaatttat 41494090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 8800746 - 8800677
Alignment:
Q  194 tctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaat 263  Q
    |||| |||||||||| | |  ||||||||| |||||||||||||||||||||  || |||||| ||||||    
T  8800746 tctataattgattttaatatacaaatttataattcaactcacttttacatgaacgtatccaaacataaat 8800677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 302
Target Start/End: Complemental strand, 11759908 - 11759799
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagccca 292  Q
    ||||||||||||||||||||  |||||||||  ||||| ||||  |||||| | ||| | |||| | ||| || |||||||| |||||| |||||  | |    
T  11759908 ttctagaattgatttttacatacaaatttatagttcaaatcacgcttacataagtgtatacaaacacaaaccaatttaccttcaactcacttttaatcaa 11759809  T
Q  293 aatcaatttt 302  Q
    ||||||||||    
T  11759808 aatcaatttt 11759799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 322
Target Start/End: Original strand, 16519500 - 16519609
Alignment:
Q  213 ctcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaatttttctcaccgca 312  Q
    |||||||||||  |||||| || |||| ||||| ||| ||  ||||||||||||||||| || || ||| || |||||  ||||||||||| | || |||    
T  16519500 ctcaaatttattgttcaacccaattttgcatgaatgtatcagaatataaatcactttactttcaattcacttctagccagaatcaatttttgtaactgca 16519599  T
Q  313 gaaccaaaca 322  Q
     |||||||||    
T  16519600 aaaccaaaca 16519609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 303
Target Start/End: Original strand, 32307129 - 32307230
Alignment:
Q  202 tgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaattt 301  Q
    ||||||||||||| | ||||||  |||||||||||||||  ||| | | |||||||||||  || ||||| ||  ||||||||||| |  ||||||||||    
T  32307129 tgatttttacacttatatttattgttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaaatcaattt 32307228  T
Q  302 tt 303  Q
    ||    
T  32307229 tt 32307230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 33502273 - 33502322
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttaca 242  Q
    ||||| ||||||||||||||| || ||||||  |||||||||||||||||    
T  33502273 ttctaaaattgatttttacacacatatttatagttcaactcacttttaca 33502322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 33962030 - 33961977
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgat 246  Q
    ||||| |||||||||||| ||||||||||||  ||||| ||| |||||||||||    
T  33962030 ttctataattgatttttagactcaaatttattgttcaagtcatttttacatgat 33961977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 44147994 - 44147937
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaa 256  Q
    |||||||||||||  ||||||||||  ||||||||||||||| |||| ||||| ||||    
T  44147994 aattgatttttactttcaaatttattgttcaactcacttttagatgaatgttttcaaa 44147937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 288
Target Start/End: Original strand, 32927900 - 32928023
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    |||||||||| | | | ||||||| || || ||||||| |||||||||| |||||||||  |||||||||||||||||||| ||| |||||| | |||||    
T  32927900 acttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaatc 32927999  T
Q  265 actttaccttaaactcaattttag 288  Q
    ||||| |||| |||||||||||||    
T  32928000 actttgccttcaactcaattttag 32928023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 323
Target Start/End: Complemental strand, 16972110 - 16971983
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaat 295  Q
    ||||||||||||||| || |||||||||  ||||| |||||||||||||| ||| | |||| | |||||| |||||||| |||||| |||||| |  |||    
T  16972110 tagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcacttttagtctgaat 16972011  T
Q  296 caatttttctcaccgcagaaccaaacat 323  Q
    ||||| || |||||| ||||||||||||    
T  16972010 caattcttgtcaccgtagaaccaaacat 16971983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 302
Target Start/End: Original strand, 4950489 - 4950628
Alignment:
Q  162 tagacttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataa 261  Q
    ||||||||||||| | |||  |||||| || |||| ||||| ||||||||||| ||||||||  |||||||||||||  ||| | | | |||||| ||||    
T  4950489 tagacttgaagctagcaatc-tagcttatgattcttgaattaatttttacacttaaatttatttttcaactcactttctcataaatatatccaaacataa 4950587  T
Q  262 atcactttaccttaaactcaattttagcccaaatcaatttt 302  Q
    ||||||||||||| ||||||||| ||||   ||||||||||    
T  4950588 atcactttaccttcaactcaattatagcaataatcaatttt 4950628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 26100206 - 26100086
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactca 281  Q
    ||||||| || ||||| ||||||||||||||| |||||||||  |||||||||||||||||| | ||  |||||| | ||||  ||||||||| |||||     
T  26100206 gtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacataaatgcatccaaacacaaatagctttaccttcaactcg 26100107  T
Q  282 attttagcccaaatcaatttt 302  Q
     |||||| |  ||||||||||    
T  26100106 tttttagtcagaatcaatttt 26100086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 13384714 - 13384653
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    ||||||| || |||||||||||||||| |||| |||||||||  ||||||||||||||||||    
T  13384714 gtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 2764509 - 2764441
Alignment:
Q  202 tgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttta 270  Q
    ||||||||||  || |||||||  |||||||||||||||| ||| ||| ||||||||||||||||||||    
T  2764509 tgatttttactttcgaatttatggttcaactcacttttacgtgaatgtatccaaatataaatcacttta 2764441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 35495015 - 35495103
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttta 270  Q
    ||||||| || ||||||||||| ||||||||| ||||| |||  ||||||| |||||||||||| | | |||||| | |||||||||||    
T  35495015 gtagcttttgattctagaattgttttttacacacaaatctatagttcaacttacttttacatgaatatatccaaacacaaatcacttta 35495103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 19649232 - 19649303
Alignment:
Q  251 tccaaatataaatcactttaccttaaactcaattttagcccaaatcaatttttctcaccgcagaaccaaaca 322  Q
    |||||| |||||||||||||| || |||||| ||||| || ||||||||||||  ||||||| |||||||||    
T  19649232 tccaaacataaatcactttacattcaactcacttttaaccaaaatcaattttttccaccgcacaaccaaaca 19649303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 35495290 - 35495368
Alignment:
Q  187 ttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatca 265  Q
    ||||| ||||| |||||||||||| ||||||||||||  ||||| |||||||||  ||| ||| |||||| ||||||||    
T  35495290 ttctgattctataattgatttttatactcaaatttattgttcaaatcacttttatttgaatgtatccaaacataaatca 35495368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 32681347 - 32681303
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    |||||||||||| || ||||||||| |||||||||||||||||||    
T  32681347 aattgatttttaaacacaaatttataattcaactcacttttacat 32681303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 32736504 - 32736592
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttta 287  Q
    |||| |||||||||| |||||||||  ||||| |||||||||||||| ||| | |||||| |||| | ||||||||  ||||| |||||    
T  32736504 aattaatttttacacacaaatttatagttcaattcacttttacatgaatgtattcaaatacaaattattttacctttgactcactttta 32736592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 38335907 - 38335816
Alignment:
Q  196 tagaattgatttttacactcaaatttatcattc-aactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttta 287  Q
    |||||||||||||||| | ||||||||| |||| ||||||||||||||||| ||| ||| || | |||||| || ||||| |||||| |||||    
T  38335907 tagaattgatttttacgcacaaatttat-attctaactcacttttacatgaatgtatccgaacacaaatcaattcaccttcaactcactttta 38335816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 4662980 - 4662889
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaa 256  Q
    |||||||||| | | | ||||||| || ||||||||||||||||||||| ||||| |||  |||||||| ||||| | ||| ||| ||||||    
T  4662980 acttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaactcgcttttccgtgaatgtatccaaa 4662889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 5859107 - 5859060
Alignment:
Q  198 gaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    |||||||||||||||| ||| |||||  ||||||||||||||||||||    
T  5859107 gaattgatttttacacacaattttatggttcaactcacttttacatga 5859060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 9695476 - 9695437
Alignment:
Q  206 ttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  9695476 ttttacactcaaatttattcttcaactcacttttacatga 9695437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 288
Target Start/End: Complemental strand, 18356135 - 18356043
Alignment:
Q  194 tctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttag 288  Q
    ||||||||||||||||||||  |||||||| ||||||||||| |||| || | ||| ||| || ||||| | | ||||||| |||||| ||||||    
T  18356135 tctagaattgatttttacac--aaatttataattcaactcacgtttagataaatgtatccgaacataaacccccttaccttcaactcacttttag 18356043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 32767413 - 32767503
Alignment:
Q  183 tagcttctggttctagaattgatttttacactcaaatttatcattcaactcactttt--acatgattgtttccaaatataaatcactttac 271  Q
    |||||| || ||| |||| ||| ||||||||| ||||||||  ||||||||||||||  |||||| ||| |||||| |||||||| |||||    
T  32767413 tagcttttgattcgagaactgacttttacacttaaatttattgttcaactcacttttacacatgaatgtatccaaacataaatcaatttac 32767503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 302
Target Start/End: Complemental strand, 32994290 - 32994180
Alignment:
Q  194 tctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc--actttaccttaaactcaattttagccc 291  Q
    ||||||||||||||||| || |||||||||  | ||| | |||||||||||| ||  |||||| |||||||  | |||||||| |||||| ||| ||||     
T  32994290 tctagaattgatttttatacacaaatttatagtgcaaatgacttttacatgaatgagtccaaacataaatcaaattttaccttcaactcactttcagcca 32994191  T
Q  292 aaatcaatttt 302  Q
     ||||||||||    
T  32994190 gaatcaatttt 32994180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 10172908 - 10172874
Alignment:
Q  209 tacactcaaatttatcattcaactcacttttacat 243  Q
    ||||||||| |||||||||||||||||||||||||    
T  10172908 tacactcaagtttatcattcaactcacttttacat 10172874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 18355897 - 18355823
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttt 269  Q
    ||||| |||||||||||||||  |||||||   |||||||| ||||||||  | ||| |||||||||||||||||||    
T  18355897 ttctaaaattgatttttacac--aaatttaaagttcaactcccttttacacaaatgtatccaaatataaatcacttt 18355823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 37684464 - 37684517
Alignment:
Q  216 aaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttt 269  Q
    |||||||| ||||||||||||||||||| | ||| |||||| | ||||||||||    
T  37684464 aaatttataattcaactcacttttacataaatgtatccaaacacaaatcacttt 37684517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 39648196 - 39648163
Alignment:
Q  187 ttctggttctagaattgatttttacactcaaatt 220  Q
    ||||| ||||||||||||||||||||||||||||    
T  39648196 ttctgattctagaattgatttttacactcaaatt 39648163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 2778569 - 2778645
Alignment:
Q  213 ctcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagc 289  Q
    ||||||| |||  |||||||||||||| ||| | | | |||||| ||||||||||||| ||| |||||| |||||||    
T  2778569 ctcaaatctattgttcaactcacttttgcataaatttatccaaaaataaatcactttatcttcaactcacttttagc 2778645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 4950381 - 4950417
Alignment:
Q  116 atgtttggttccatttttggaggtgccaaaattgatt 152  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  4950381 atgtttggttccaattttggaggtgctaaaattgatt 4950417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 35064497 - 35064461
Alignment:
Q  204 atttttacactcaaatttatcattcaactcactttta 240  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  35064497 atttttacacttaaatttattattcaactcactttta 35064461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 38868779 - 38868851
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatca 265  Q
    ||||| |||||||||| || | |||||||||  ||| ||||||||||||||||  || | |||||||||||||    
T  38868779 ttctataattgattttcacgcacaaatttatagttctactcacttttacatgaacgtattcaaatataaatca 38868851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 177 - 287
Target Start/End: Complemental strand, 55927835 - 55927725
Alignment:
Q  177 aaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaa 276  Q
    |||| |||||||||| |||||||||||||  | ||||||||||||||  ||||| |||||||||||||| ||| |||||| ||||||||| ||| ||  |    
T  55927835 aaattgtagcttctgattctagaattgatcgtcacactcaaatttattgttcaagtcacttttacatgaatgtatccaaacataaatcacattaactcca 55927736  T
Q  277 actcaatttta 287  Q
    |||||||||||    
T  55927735 actcaatttta 55927725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 273
Target Start/End: Original strand, 4243414 - 4243504
Alignment:
Q  184 agcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttcc-aaatataaatcactttacct 273  Q
    ||||| || |||||||||||||||||||||||||||||||  ||| |||||||||||||| | ||| ||| ||| | ||||||||||||||    
T  4243414 agcttttgattctagaattgatttttacactcaaatttattgttctactcacttttacatcaatgtctccaaaacaaaaatcactttacct 4243504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 32818445 - 32818336
Alignment:
Q  167 ttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaa--atataaatc 264  Q
    |||||||| ||| | ||||||| || ||||||||||||||||| ||| |||||||||  ||||||| |||||||||||| ||| |||||  | ||| |||    
T  32818445 ttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatccaaacacatatatc 32818346  T
Q  265 actttacctt 274  Q
    ||||||||||    
T  32818345 actttacctt 32818336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 8604671 - 8604590
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttacctt 274  Q
    |||||||||||||||| |||| |||||||||  || ||  ||||||||||||| ||| |||||| |||||||||||||||||    
T  8604671 ttctagaattgattttcacacacaaatttatagttgaatgcacttttacatgaatgtatccaaacataaatcactttacctt 8604590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 35065099 - 35065176
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttta 270  Q
    ||||||||||||||||||||| |||||||||   || |||||||||||||||| ||| |||||| | |||||||||||    
T  35065099 ttctagaattgatttttacacacaaatttatatctccactcacttttacatgaatgtatccaaacacaaatcacttta 35065176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 21691272 - 21691186
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactt 268  Q
    ||||||| ||||| ||||||||||||| |||| |||||||||  |||||| ||||||||||||| | | |||||| | |||||||||    
T  21691272 gtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacacttttacatgaatatatccaaacacaaatcactt 21691186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 320
Target Start/End: Original strand, 33843987 - 33844141
Alignment:
Q  167 ttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatga--ttgtttccaaatataaatc 264  Q
    |||||||| ||||| | ||||| || ||||| |||||||||| ||||||||||||||  ||||||| | ||||||||||   | | |||||| | ||||     
T  33843987 ttgaagctagaaattggagcttttgattctaaaattgattttaacactcaaatttattgttcaacttatttttacatgaatatctctccaaacacaaata 33844086  T
Q  265 actttaccttaaactcaattttagcccaaatcaatttttctcaccgcagaaccaaa 320  Q
    | ||||| || ||||| ||||||||| |||||||| ||| ||  ||||||||||||    
T  33844087 attttacattcaactc-attttagccaaaatcaatctttgtcgacgcagaaccaaa 33844141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 10185202 - 10185293
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaa 256  Q
    |||||||| | ||||| | ||||| || ||||| ||||||| |||||||||||||||||  || ||||||||||||||| | ||| ||||||    
T  10185202 acttgaaggtagaaattgaagcttttgattctaaaattgatctttacactcaaatttattgtttaactcacttttacattaatgtatccaaa 10185293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 26911448 - 26911390
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaat 257  Q
    |||||||||||||| |||||||||| |||||| ||||||||| |||||| |||| ||||    
T  26911448 aattgatttttacattcaaatttattattcaaatcacttttatatgattatttctaaat 26911390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 32100336 - 32100378
Alignment:
Q  201 ttgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  32100336 ttgatttttacactcaaatttattgttcaactcacttttacat 32100378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 33843764 - 33843854
Alignment:
Q  210 acactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaatt 300  Q
    |||||| |||||||  ||||||||||| |||||||| | | |||||| |||||||||||||| |  |||||| ||||||||  ||||||||    
T  33843764 acactcgaatttattgttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcacttttagccagaatcaatt 33843854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 287
Target Start/End: Complemental strand, 41751321 - 41751227
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttta 287  Q
    |||||||||||||||||| ||| ||||||||  || || ||| |||||||||| ||| | |||| || |||||||||| ||| |||||| |||||    
T  41751321 ttctagaattgatttttaaacttaaatttattgtttaattcagttttacatgaatgtattcaaacattaatcactttatcttgaactcactttta 41751227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 47144250 - 47144344
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttta 287  Q
    ||||| ||||||||||||| || ||||||||  | ||||| ||||||| |||| ||| |||||| |||||||| | || ||| ||||||||||||    
T  47144250 ttctataattgatttttacgctaaaatttattgtccaactaacttttagatgaatgtatccaaacataaatcaatatatcttcaactcaatttta 47144344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 22250234 - 22250371
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    |||||||||  ||||| | ||||| || ||||  ||||| |||| | ||||||||||||  ||| | |||||||||||||| ||| ||||||| ||||||    
T  22250234 acttgaagcaagaaattgaagcttttgattctgaaattgcttttaatactcaaatttattgttcgattcacttttacatgaatgtatccaaatgtaaatc 22250333  T
Q  265 actttaccttaaactcaattttagcccaaatcaatttt 302  Q
    |||| || || |||||  |||||| |  ||||||||||    
T  22250334 acttcacattcaactcgcttttagtcataatcaatttt 22250371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 16551992 - 16552053
Alignment:
Q  192 gttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaa 255  Q
    ||||||||||||||||| ||||  ||||||||  |||||||||||||||||||| ||| |||||    
T  16551992 gttctagaattgattttcacac--aaatttatagttcaactcacttttacatgaatgtatccaa 16552053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 29904251 - 29904362
Alignment:
Q  176 gaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttacctta 275  Q
    ||||| |||||||||  |||||||| |||| |||||||||||||||||  ||||| ||||| |||| ||| | | ||  || |||||| |||| || ||     
T  29904251 gaaattgtagcttctaattctagaactgatgtttacactcaaatttattgttcaattcactattacttgaatatatcataacataaattacttcacattc 29904350  T
Q  276 aactcaatttta 287  Q
    ||||||||||||    
T  29904351 aactcaatttta 29904362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 45011899 - 45011962
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||||| || |||||||||||||||| |||| ||||||||| |||  ||||||||||| ||||    
T  45011899 gtagcttttgattctagaattgattttcacacacaaatttataattttactcacttttatatga 45011962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 9064267 - 9064317
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacat 243  Q
    |||||||||||||||| |||||||| ||||   ||||||||||||||||||    
T  9064267 ttctagaattgattttcacactcaagtttacggttcaactcacttttacat 9064317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Complemental strand, 29468624 - 29468574
Alignment:
Q  251 tccaaatataaatcactttaccttaaactcaattttagcccaaatcaattt 301  Q
    ||||||||||||||||||||| || |||||| ||||||||  |||||||||    
T  29468624 tccaaatataaatcactttacattcaactcatttttagccataatcaattt 29468574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 2206419 - 2206354
Alignment:
Q  166 cttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaac 231  Q
    |||||||||  |||| | ||||| || |||||| |||||||||| |||||||||||||| ||||||    
T  2206419 cttgaagctaaaaattggagcttttgattctaggattgatttttgcactcaaatttatcgttcaac 2206354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 22683909 - 22683994
Alignment:
Q  202 tgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaatttta 287  Q
    ||||||||||| | ||||||||  |||||||| ||||||||| | ||| |||||| ||||| || ||||| || |||||| |||||    
T  22683909 tgatttttacattgaaatttattgttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactcactttta 22683994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 1023934 - 1023858
Alignment:
Q  226 ttcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaatttt 302  Q
    ||||||||||||| |||| | | | |||||| | ||||||||||||||| |||||| |||||||  |||||| ||||    
T  1023934 ttcaactcactttcacatcaatatatccaaacaaaaatcactttaccttcaactcacttttagctaaaatcattttt 1023858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 21743161 - 21743086
Alignment:
Q  226 ttcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaatttt 302  Q
    ||||| ||||||| ||||||  || | ||||||||||||||||||| || || ||| ||||||||| ||||||||||    
T  21743161 ttcaattcactttgacatgaacgtattcaaatataaatcactttacatt-aattcacttttagcccgaatcaatttt 21743086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 37439153 - 37439221
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactc 233  Q
    |||||||||| |||||  |||||| |  ||||| ||||||||||||||||||| |||||  ||||||||    
T  37439153 acttgaagctagaaattatagcttttaattctataattgatttttacactcaattttattgttcaactc 37439221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 36639945 - 36640025
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    |||||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||   |||| |||||||||||||||    
T  36639945 acttgaagctggaaattgtagcttctaattctagaattgttttttacactcaaatttaatgttcacctcacttttacatga 36640025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 271
Target Start/End: Original strand, 8591519 - 8591595
Alignment:
Q  195 ctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttac 271  Q
    ||||||||||||||| ||||||||||| |  ||||||||||||||| | || ||| ||||||||||||||| |||||    
T  8591519 ctagaattgattttttcactcaaatttgttgttcaactcacttttataggaatgtatccaaatataaatcaatttac 8591595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 15368498 - 15368615
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactca 281  Q
    |||||||||| ||||| ||||||| ||||||||||||| | |  ||||| |||||||||||||  ||| | |||| ||||||||| || |||| ||||||    
T  15368498 gtagcttctgattctataattgatctttacactcaaatatgttgttcaagtcacttttacatggatgtattcaaacataaatcac-ttcccttcaactca 15368596  T
Q  282 attttagcccaaatcaatt 300  Q
    |||| ||||  ||||||||    
T  15368597 atttcagccagaatcaatt 15368615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 193 - 303
Target Start/End: Complemental strand, 41819783 - 41819673
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagccca 292  Q
    ||||||||| |||||||| | |||||||||||||| || |||||||||| | | ||| |||||| ||||  ||||||||| | |||||| ||||||||      
T  41819783 ttctagaatagatttttagattcaaatttatcatttaattcacttttacgtaaatgtgtccaaacataagccactttaccattaactcacttttagccat 41819684  T
Q  293 aatcaattttt 303  Q
    |||||| ||||    
T  41819683 aatcaactttt 41819673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 270
Target Start/End: Complemental strand, 9185067 - 9184987
Alignment:
Q  190 tggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttta 270  Q
    ||||||||||||||||||| ||| | ||||||||| |||||||||||| ||||| | ||| | |||| |||||||| ||||    
T  9185067 tggttctagaattgattttaacatttaaatttatcgttcaactcacttctacataagtgtattcaaacataaatcatttta 9184987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 300
Target Start/End: Complemental strand, 34250428 - 34250296
Alignment:
Q  165 acttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatc 264  Q
    |||||| ||| ||||| ||||||| || ||||| ||||| |||| ||||  |||||| |  ||||||| ||||||  |||| |||||||||| |||||||    
T  34250428 acttgatgctagaaattgtagcttttgattctacaattgtttttcacac--aaattttttgttcaacttacttttt-atgaatgtttccaaacataaatc 34250332  T
Q  265 actttaccttaaactcaattttagcccaaatcaatt 300  Q
    |||||| ||| ||||||||| ||| | |||||||||    
T  34250331 actttagcttcaactcaattatagtcaaaatcaatt 34250296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 288
Target Start/End: Complemental strand, 35139060 - 35138977
Alignment:
Q  205 tttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttag 288  Q
    ||||| |||||||||||||  ||||||||||||| | |||| ||| ||  || |||||||| |||||||| |||||||||||||    
T  35139060 tttttccactcaaatttattgttcaactcactttcatatgaatgtatctgaacataaatcattttaccttcaactcaattttag 35138977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 6951365 - 6951259
Alignment:
Q  182 gtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactca 281  Q
    ||||||| || ||||| ||||||||| |||||  |||||||| |||||| |||||||||||||| | | |||||||| || ||| ||||| ||  |||||    
T  6951365 gtagcttttgattctataattgatttgtacacataaatttataattcaattcacttttacatgaatttatccaaatacaagtcattttactttcgactca 6951266  T
Q  282 attttag 288  Q
     ||||||    
T  6951265 cttttag 6951259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 10898763 - 10898809
Alignment:
Q  199 aattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||    
T  10898763 aattgatttttacacacaaatttattgttcaactcacttttacatga 10898809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 37121622 - 37121699
Alignment:
Q  194 tctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttac 271  Q
    |||||||||||| |||||||| ||||||||  ||  ||||||||||| |||| ||| |  ||||||||||||||||||    
T  37121622 tctagaattgatctttacacttaaatttattcttttactcacttttatatgaatgtatgtaaatataaatcactttac 37121699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 8121635 - 8121679
Alignment:
Q  251 tccaaatataaatcactttaccttaaactcaattttagcccaaat 295  Q
    |||||| ||||||||||||||||| || |||||||||||||||||    
T  8121635 tccaaacataaatcactttaccttcaaatcaattttagcccaaat 8121679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 42858144 - 42858196
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||| |||||||||| |||| |||||||||  ||||||||||||||||||||    
T  42858144 ttctataattgattttcacacacaaatttatagttcaactcacttttacatga 42858196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 24306174 - 24306115
Alignment:
Q  164 gacttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttat 223  Q
    ||||||||| | ||||| ||| ||| || ||||| |||||||||||||||||||||||||    
T  24306174 gacttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttat 24306115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 24367142 - 24367201
Alignment:
Q  164 gacttgaagctggaaatagtagcttctggttctagaattgatttttacactcaaatttat 223  Q
    ||||||||| | ||||| ||| ||| || ||||| |||||||||||||||||||||||||    
T  24367142 gacttgaagttagaaattgtaacttttgattctataattgatttttacactcaaatttat 24367201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 15874054 - 15873930
Alignment:
Q  176 gaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttacctta 275  Q
    ||||| ||||||| || ||||||||||| |||||||||| | | ||||  || || |||||||||||||| | | |||||| |||||  | | ||||||     
T  15874054 gaaattgtagcttttgattctagaattgctttttacact-agagttattgttaaattcacttttacatgagtatatccaaacataaactattataccttc 15873956  T
Q  276 aactcaattttagcccaaatcaattt 301  Q
    ||||||||||| |||  |||||||||    
T  15873955 aactcaatttttgccagaatcaattt 15873930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 32693742 - 32693803
Alignment:
Q  209 tacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttta 270  Q
    ||||||||||| |||  || |||| |||||| ||||| ||| ||||||||||||||||||||    
T  32693742 tacactcaaatgtattgttaaactgacttttgcatgaatgtatccaaatataaatcacttta 32693803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 7925431 - 7925467
Alignment:
Q  202 tgatttttacactcaaatttatcattcaactcacttt 238  Q
    ||||||||||||||||||||||  |||||||||||||    
T  7925431 tgatttttacactcaaatttattgttcaactcacttt 7925467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 9818759 - 9818823
Alignment:
Q  182 gtagcttctggttctagaattgattttt-acactcaaatttatcattcaactcacttttacatga 245  Q
    ||||||| || ||||||||||||||||| | || |||||||||  ||||||||||||||| ||||    
T  9818759 gtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcacttttatatga 9818823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 11418879 - 11418781
Alignment:
Q  202 tgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaattt 301  Q
    |||||||||||| |||||||||  || |||||| ||| ||| |||||| | |||| |||||||||||| |||| || | |||||| ||| ||||||||||    
T  11418879 tgatttttacacacaaatttattgttaaactcaattt-acacgattgtatgcaaacataaatcacttttcctttaaat-aattttcgccaaaatcaattt 11418782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 301
Target Start/End: Original strand, 14671085 - 14671168
Alignment:
Q  217 aatttatcattcaactcacttttacatgattgtttccaaatataaatcactttaccttaaactcaattttagcccaaatcaattt 301  Q
    |||||||||| |||||||||||||||||| ||  |||||| |||||| |||| || || || ||| ||||||||  |||||||||    
T  14671085 aatttatcatacaactcacttttacatgaatgcatccaaacataaat-acttcacattcaattcacttttagccataatcaattt 14671168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 15368139 - 15368175
Alignment:
Q  116 atgtttggttccatttttggaggtgccaaaattgatt 152  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  15368139 atgtttggttccacttttggaggagccaaaattgatt 15368175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 33608540 - 33608592
Alignment:
Q  193 ttctagaattgatttttacactcaaatttatcattcaactcacttttacatga 245  Q
    ||||||||| |||||||||| | ||||| ||  ||||||||||||||||||||    
T  33608540 ttctagaatggatttttacagttaaattcatagttcaactcacttttacatga 33608592  T

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Target: scaffold0314 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 269
Target Start/End: Original strand, 17152 - 17245
Alignment:
Q  176 gaaatagtagcttctggttctagaattgatttttacactcaaatttatcattcaactcacttttacatgattgtttccaaatataaatcacttt 269  Q
    ||||| |||||||||| ||||| ||| |||||||||||| | |||||| ||||||||| | ||| ||| | ||| | |||| ||||||||||||    
T  17152 gaaatcgtagcttctgattctaaaatagatttttacactgagatttattattcaactcccgttttcattaatgtattcaaacataaatcacttt 17245  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 23633 - 23594
Alignment:
Q  202 tgatttttacactcaaatttatcattcaactcacttttac 241  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  23633 tgatttttagactaaaatttatcattcaactcacttttac 23594  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 301
Target Start/End: Original strand, 65538 - 65588
Alignment:
Q  251 tccaaatataaatcactttaccttaaactcaattttagcccaaatcaattt 301  Q
    |||||| |||||||||||||| ||||||||| ||||| || ||||||||||    
T  65538 tccaaacataaatcactttacattaaactcatttttaaccaaaatcaattt 65588  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 199431 - 199361
Alignment:
Q  252 ccaaatataaatcactttaccttaaactcaattttagcccaaatcaatttttctcaccgcagaaccaaaca 322  Q
    ||||| |||||||||||||| || |||||| ||||| || ||||||||| ||  ||||||| |||||||||    
T  199431 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattctttccaccgcacaaccaaaca 199361  T

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