View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2968_low_3 (Length: 443)
Name: NF2968_low_3
Description: NF2968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2968_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 40482400 - 40482834
Alignment:
| Q |
1 |
tccaccactataccctttgcttctggttctgcaggcaagttttttctcgctcttt-gctcttttccccttgtattctcaaccacttgtctatttttattg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40482400 |
tccaccactataccctttgcttctggttctgcaggcaagttttttctcactcttttgctcttttccccttgtattctcaaccacttgtctatttttattg |
40482499 |
T |
|
| Q |
100 |
cactagaattgttggtgagttcattttcaaagtattataaatagagatgataagcatggtacatgtcatccaagaatcttgcacaacttacataccacct |
199 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40482500 |
cactagaattgtttgtgagttcattttcaaagtattataaatagagatgataagcatggtacatgtcatccaagagtcttgcacaacttacataccacct |
40482599 |
T |
|
| Q |
200 |
atgaagcactaacataaacacataataaccgataataatttaagaaaatacaagtgattaaatgtgtggatatttgtgttggacactaatacgtatgaga |
299 |
Q |
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| T |
40482600 |
atgaagcactaacataaacacataata-ccgataataatttaagaaaatacaagtgattaaatttgtggatattggtgttggacactaatacgtatgaga |
40482698 |
T |
|
| Q |
300 |
cacgtcttcactctaaagtctcggtgctatcaataatattagttagatgattagatgggaagttatctttggtaacttagttgcacaagaattatcctat |
399 |
Q |
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| T |
40482699 |
cacgtcttcactctaaagtctcggtgctatcaataatattagttagatgattagatgggaagttatcttttgtaacttagttgcacaagaattatcctat |
40482798 |
T |
|
| Q |
400 |
tttactttctttttctttacatgttcactctctgct |
435 |
Q |
| |
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| T |
40482799 |
tttactttctttttctttacatgttcactctctgct |
40482834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 31652442 - 31652488
Alignment:
| Q |
218 |
cacataataaccgataataatttaagaaaatacaagtgattaaatgt |
264 |
Q |
| |
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|||||| | ||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
31652442 |
cacatagtcaccgataataatttaagaaaatagaagtgattgaatgt |
31652488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 262
Target Start/End: Complemental strand, 32931545 - 32931512
Alignment:
| Q |
229 |
cgataataatttaagaaaatacaagtgattaaat |
262 |
Q |
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| T |
32931545 |
cgataataatttaagaaaatagaagtgattaaat |
32931512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 31244018 - 31244050
Alignment:
| Q |
232 |
taataatttaagaaaatacaagtgattaaatgt |
264 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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|
| T |
31244018 |
taataatttaagaaaatataagtgattaaatgt |
31244050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 13398353 - 13398385
Alignment:
| Q |
232 |
taataatttaagaaaatacaagtgattaaatgt |
264 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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|
| T |
13398353 |
taataatttaagaaaatagaagtgattaaatgt |
13398385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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