View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2968_low_8 (Length: 228)
Name: NF2968_low_8
Description: NF2968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2968_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 41948417 - 41948205
Alignment:
| Q |
1 |
ttgatgtataacatgtgagtgttagttgtaaattttgggatattcgagttcaattcttaatgataaagtaaaactactcttataatatctattgtgccaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41948417 |
ttgatgtataacatgtgagtgttagttgtaaattttgggatattcgagttcgattcttaatgataaagtaaaactactcttataatatctattgtgccaa |
41948318 |
T |
|
| Q |
101 |
ttagcacttcaaatggactaaattaaaaagttgttagcaactctaagagtttagaatggttgcaatgtttaattgataattaatatcgagtgtacgaagt |
200 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41948317 |
ttagcacttcaaatggaccaaatcaaaaagttgttagcaactctaagagtttagaatggttgcaatgtttaattgataattaatatcgagtgtacgaagt |
41948218 |
T |
|
| Q |
201 |
ttgacagaataat |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41948217 |
ttgacagaataat |
41948205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University