View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2968_low_9 (Length: 226)
Name: NF2968_low_9
Description: NF2968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2968_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 39526983 - 39527192
Alignment:
| Q |
1 |
tgctcaatgtcctgactggttgactccctgctcaccttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39526983 |
tgctcaatgtcctgactggttgactccctactcaccttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgc |
39527082 |
T |
|
| Q |
101 |
acgtacctcctcaacccacttgttagtgttaagaaatgattgccgatctgcatcagaacagcttgctaagaaatttaatggttataatttgatttatgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39527083 |
acgtacctcctcaacccacttgttagtgttaagaaatgattgccgatctgcatcagaacagcttgctaagaaatttaatggttataatttgatttatgcc |
39527182 |
T |
|
| Q |
201 |
gcatagtttg |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
39527183 |
gcatagtttg |
39527192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 144
Target Start/End: Original strand, 37852879 - 37852992
Alignment:
| Q |
31 |
ctcaccttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctcgttctgcacgtacctcctcaacccacttgttagtgtt |
130 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||| || || ||||||||||| || |||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
37852879 |
ctcaccttttctcgacaagatcagttttgtttccaaccaagacaattataacatcactaccacgttcttgacgcacctcctcaacccacttgttagtgtt |
37852978 |
T |
|
| Q |
131 |
aagaaatgattgcc |
144 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37852979 |
cagaaatgattgcc |
37852992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 4583580 - 4583521
Alignment:
| Q |
34 |
accttttttcaacaagatcagttttgtttccaaccaaaacgataataacatcactgcctc |
93 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||||| | ||| ||||| ||||||||||||| |
|
|
| T |
4583580 |
acctcttttcaacgagatcagttttgttcccaacaagaacaataatgacatcactgcctc |
4583521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University