View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2969_high_2 (Length: 575)

Name: NF2969_high_2
Description: NF2969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2969_high_2
NF2969_high_2
[»] chr8 (6 HSPs)
chr8 (244-564)||(1789039-1789359)
chr8 (244-526)||(21185436-21185734)
chr8 (244-301)||(4327298-4327355)
chr8 (488-562)||(21347016-21347087)
chr8 (490-562)||(17028259-17028331)
chr8 (490-562)||(17558695-17558767)
[»] chr2 (5 HSPs)
chr2 (244-564)||(18739251-18739566)
chr2 (244-562)||(2590146-2590476)
chr2 (244-401)||(34564402-34564545)
chr2 (359-416)||(35969616-35969673)
chr2 (513-561)||(35969416-35969463)
[»] chr6 (2 HSPs)
chr6 (244-564)||(19697985-19698300)
chr6 (244-301)||(6950123-6950180)
[»] chr7 (6 HSPs)
chr7 (244-564)||(11673659-11673979)
chr7 (18-171)||(5756552-5756705)
chr7 (18-171)||(5752638-5752791)
chr7 (314-413)||(3850845-3850946)
chr7 (244-301)||(3850983-3851040)
chr7 (244-278)||(39426629-39426663)
[»] scaffold0014 (2 HSPs)
scaffold0014 (244-564)||(82283-82599)
scaffold0014 (247-459)||(86685-86900)
[»] chr1 (3 HSPs)
chr1 (244-301)||(1968477-1968534)
chr1 (244-299)||(1953395-1953450)
chr1 (521-562)||(47580330-47580370)
[»] chr3 (9 HSPs)
chr3 (314-400)||(11634484-11634570)
chr3 (244-301)||(42258198-42258255)
chr3 (244-299)||(11634609-11634664)
chr3 (244-301)||(11641135-11641192)
chr3 (344-391)||(11640538-11640585)
chr3 (513-562)||(19930176-19930225)
chr3 (244-301)||(19930556-19930613)
chr3 (249-301)||(42254076-42254128)
chr3 (513-561)||(42253694-42253742)
[»] chr4 (1 HSPs)
chr4 (488-562)||(20058204-20058277)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 244 - 564
Target Start/End: Complemental strand, 1789359 - 1789039
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttattttttataaccgttgggtcaaatgctaaaaactcattctgtattg 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||    
T  1789359 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttattttttataaccgttgggtcaaatgctaaaaactcattccctagtg 1789260  T
Q  344 ttatgcttcatttcccttaatataaggaacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacaagatacacttaacgactaaat 443  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1789259 ttatgcctcatttcccttaatataaggaacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacaagatacacttaactactaaat 1789160  T
Q  444 acatagcaattgccagtacagagaaaaataactacagatacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattga 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1789159 acatagcaattgccagtacagagaaaaataactacagatacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattga 1789060  T
Q  544 ggtttctgggttacatctcat 564  Q
    |||||||||||||||||||||    
T  1789059 ggtttctgggttacatctcat 1789039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 244 - 526
Target Start/End: Complemental strand, 21185734 - 21185436
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttattttt-------------tataaccgttgggtcaaatgctaaaaac 330  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |             | || | ||| ||||||| ||| ||| |    
T  21185734 tgttgatttaaccatgtgatatttacttagtcaaaaccttatttgtcatatttatttatgtaacggttgatgtttatcagtttggtcaaaggcttaaatc 21185635  T
Q  331 tcattctgtattgttatgcttcatttcccttaatataaggaacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacaagatacac 430  Q
     |||||  ||||||||||| ||||||||||||||| ||||||||||||||||||| | | ||| |||||| ||||||||||||||||||| |||| || |    
T  21185634 acattccctattgttatgcctcatttcccttaatacaaggaacaactcaccacaactttaatgaatatatccttcttttatttctccaaagaagacacgc 21185535  T
Q  431 ttaac-gact-aaatacatagcaattgccagtacagagaaaaataactacagatacatactc--tca-cttcatgtttttctgtacccacaatcattttc 525  Q
    |||||  |||  ||||||||||||||||||||||  | ||||||||| | ||||||||||||  ||| |||||||||||||||||| | |||| ||||||    
T  21185534 ttaactcactgcaatacatagcaattgccagtac--aaaaaaataacgatagatacatactctttcaccttcatgtttttctgtactctcaattattttc 21185437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 4327355 - 4327298
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatttt 301  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  4327355 tgttgatttaaccatgtgatatttacttagtcaaaaccttatttgccaaatttatttt 4327298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 562
Target Start/End: Original strand, 21347016 - 21347087
Alignment:
Q  488 ctctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctc 562  Q
    |||||||||||| ||||||||||   ||||| ||||||||||||||||| |||||| |||| |||||||||||||    
T  21347016 ctctcacttcatatttttctgtat--acaattattttctctcatccaaagtattga-gtttgtgggttacatctc 21347087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 562
Target Start/End: Original strand, 17028259 - 17028331
Alignment:
Q  490 ctcacttcatgtttttctgtacccacaatcattttctctcatccaaaa-tattgaggtttctgggttacatctc 562  Q
    |||||||||||||| | | ||| || ||| |||||||||||||||||| |||||| |||||| |||||||||||    
T  17028259 ctcacttcatgtttctttttacacataattattttctctcatccaaaattattga-gtttctaggttacatctc 17028331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 562
Target Start/End: Original strand, 17558695 - 17558767
Alignment:
Q  490 ctcacttcatgtttttctgtacccacaatcattttctctcatccaaaa-tattgaggtttctgggttacatctc 562  Q
    |||||||||||||| | | ||| || ||| |||||||||||||||||| |||||| |||||| |||||||||||    
T  17558695 ctcacttcatgtttctttttacacataattattttctctcatccaaaattattga-gtttctaggttacatctc 17558767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 244 - 564
Target Start/End: Complemental strand, 18739566 - 18739251
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttattttttataaccgttgggtcaaatgctaaaaactcattctgtattg 343  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||  |||||    
T  18739566 tgttgatttaaccatgtgatatttacttagtcaaaaccttatttgtcacaattattttttataaccattggctcaaatgctaaaaactcattccctattg 18739467  T
Q  344 ttatgcttcatttcccttaatataaggaacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacaagatacacttaacgacta-aa 442  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||    
T  18739466 ttatgcctcatttcccttaatataaggaacaactcaccacaactctcatgtatatattcttcttttatttctccaaacaagatacgcttaactactacaa 18739367  T
Q  443 tacatagcaattgccagtacagagaaaaataactacagatacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattg 542  Q
    ||||||||||||||||||||| | |||      |||| |||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  18739366 tacatagcaattgccagtacacaaaaa------tacatatacatactctcacttcatgtttttctgtacgtacaattattttctctcatccaaaatattg 18739273  T
Q  543 aggtttctgggttacatctcat 564  Q
    ||||||||||||||||||||||    
T  18739272 aggtttctgggttacatctcat 18739251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 244 - 562
Target Start/End: Original strand, 2590146 - 2590476
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttattttttataaccgtt--------------gggtcaaatgctaaaaa 329  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||  |||||||||              || |||||||||||||     
T  2590146 tgttgatttaaccatgtgatatttacttagtcaaaaccttatttgtcacaattatttt--ataaccgttcatgtttgatggttggatcaaatgctaaaat 2590243  T
Q  330 ctcattctgtattgttatgcttcatttcccttaatataaggaacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacaagataca 429  Q
    |||||||  ||||||||||| || |||||||||||||||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||||| | |||    
T  2590244 ctcattccctattgttatgcctcttttcccttaatataaggaacaactcaccgcaactctcatgaatatatccttcttttatttctccaaacaaaaaaca 2590343  T
Q  430 cttaac-gacta-aatacatagcaattgccagtacagagaaaaataactacagatacatac--tctcacttcatgtttttctgtacccacaatcattttc 525  Q
    ||||||  |||| ||||||||||||||||| ||||  ||||||||||| ||| ||||||||  | ||||||||||||||| ||||| |||||| ||||||    
T  2590344 cttaactcactacaatacatagcaattgccggtac--agaaaaataacgacaaatacatactttttcacttcatgttttt-tgtactcacaattattttc 2590440  T
Q  526 tctcatccaaaatattgaggtttctgggttacatctc 562  Q
    ||||||| |||||||||| |||||||||||| |||||    
T  2590441 tctcatctaaaatattga-gtttctgggttatatctc 2590476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 244 - 401
Target Start/End: Original strand, 34564402 - 34564545
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttattttttataaccgttgggtcaaatgctaaaaactcattctgtattg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||  |||||    
T  34564402 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgt--------------ataaccgttgggtcaaatgctaaaaactcattccctattg 34564487  T
Q  344 ttatgcttcatttcccttaatataaggaacaactcaccacaaatctcatgtatatatt 401  Q
    |||||| ||||||||||||||||||||||||||  ||||||| |||||||||||||||    
T  34564488 ttatgcctcatttcccttaatataaggaacaacgtaccacaactctcatgtatatatt 34564545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 416
Target Start/End: Complemental strand, 35969673 - 35969616
Alignment:
Q  359 cttaatataaggaacaactcaccacaaatctcatgtatatattcttcttttatttctc 416  Q
    |||| |||||||||||||||||||||| ||  |||||||||| |||| ||| ||||||    
T  35969673 cttagtataaggaacaactcaccacaactccgatgtatatatccttcatttctttctc 35969616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 561
Target Start/End: Complemental strand, 35969463 - 35969416
Alignment:
Q  513 cacaatcattttctctcatccaaaatattgaggtttctgggttacatct 561  Q
    |||||| ||||||||||||| |||||||||| |||||| ||||||||||    
T  35969463 cacaattattttctctcatctaaaatattga-gtttctaggttacatct 35969416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 244 - 564
Target Start/End: Complemental strand, 19698300 - 19697985
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttattttttataaccgttgggtcaaatgctaaaaactcattctgtattg 343  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  ||||     
T  19698300 tgttgatttaaccatgttatatttacttagtcaaagccttatttgtcacaattattttttataaccgttgggtcaaatgctaaaaattcattccctatta 19698201  T
Q  344 ttatgcttcatttcccttaatataaggaacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacaagatacacttaacgacta-aa 442  Q
    |||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||    
T  19698200 ttatgcctcatttcccttaatataaggaacaactcaccacaactttcatgtatatattcttcttttatttctccaaacaagatacgattaactactacaa 19698101  T
Q  443 tacatagcaattgccagtacagagaaaaataactacagatacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattg 542  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||    |||  ||||| |||||||||| ||||||||||||    
T  19698100 tacatagcaattgccagtac--agaaaaataactacagatacatactctcacttaatgtttt----tacgtacaattattttctctcttccaaaatattg 19698007  T
Q  543 aggtttctgggttacatctcat 564  Q
    ||||||||||||||||||||||    
T  19698006 aggtttctgggttacatctcat 19697985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 6950180 - 6950123
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatttt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6950180 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcaaatttatttt 6950123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 244 - 564
Target Start/End: Original strand, 11673659 - 11673979
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatttttt--ataaccgttgggtcaaatgctaaaaactcattctgtat 341  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  |||| |||||||||||||||||||| |||||||  |||    
T  11673659 tgttgatttaaccatgtgatatttacttagtcaaagtcttatttgtcacaattattttttttataagcgttgggtcaaatgctaaaagctcattccctat 11673758  T
Q  342 tgttatgcttcatttcccttaatataaggaacaactcaccacaaatctcatgtatatattcttcttttatttctccaaacaagatacacttaacgacta- 440  Q
    |||||||| |||||||||||| || | ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| ||||     
T  11673759 tgttatgcctcatttcccttactacagggaacaactcaccacaactctgatgtatatattcttcttttatttctccaaacaagatacgcttaactactac 11673858  T
Q  441 aatacatagcaattgccagtacagagaaaaataactacagatacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatat 540  Q
    ||||||||||||||| |||| |  | |||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||    
T  11673859 aatacatagcaattgtcagtcc--aaaaaaataactacagatacatactctcacttcatg-ttttctgtacatacaatcattttctctcatccaaaatat 11673955  T
Q  541 tgaggtttctgggttacatctcat 564  Q
    ||||||||||||||||||||||||    
T  11673956 tgaggtttctgggttacatctcat 11673979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 5756552 - 5756705
Alignment:
Q  18 gatatcgaggggtcttaccatactgaatggttcaagcttgcaaagcagtcgaggatttagatttctgtagttgaactcttcaagattcctaataaatgta 117  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5756552 gatatcgacgggtcttaccatactgaatggttcaagcttttaaagcagtcgaggatttagatttctgtagttgaactcttcaagattcctaataaatgta 5756651  T
Q  118 atgttttttactcaagactgaatgctgggttgagcttacatagctgcaatgcgg 171  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  5756652 atgttttttactcaagactgtatgctgagttgagcttacatagctgcaatgcgg 5756705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 5752638 - 5752791
Alignment:
Q  18 gatatcgaggggtcttaccatactgaatggttcaagcttgcaaagcagtcgaggatttagatttctgtagttgaactcttcaagattcctaataaatgta 117  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  5752638 gatatcgaggggtcgtaccatactgaatggttcaagcttgccaagcagtcgaggatttagattactgtgtttgaactcttcaagattcctaataaatgta 5752737  T
Q  118 atgttttttactcaagactgaatgctgggttgagcttacatagctgcaatgcgg 171  Q
    |||||||||||||||||||| || ||| ||||||||||||||||||||||||||    
T  5752738 atgttttttactcaagactgtatactgagttgagcttacatagctgcaatgcgg 5752791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 3850946 - 3850845
Alignment:
Q  314 ggtcaaatgctaaaaactcattctgtattgttatgcttcatttcccttaatataaggaacaactcaccacaa--atctcatgtatatattcttcttttat 411  Q
    ||||||| ||| ||| |||||||  |||| |||||| |||| | ||||||||||||||||||||||||||||   ||||||| |||||| |||| |||||    
T  3850946 ggtcaaaggcttaaatctcattccctattattatgcctcatgttccttaatataaggaacaactcaccacaactctctcatggatatatccttcctttat 3850847  T
Q  412 tt 413  Q
    ||    
T  3850846 tt 3850845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 3851040 - 3850983
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatttt 301  Q
    ||||||||||| || ||||||||||||||||||||| ||||||| ||| |||||||||    
T  3851040 tgttgatttaatcaagtgatatttacttagtcaaagtcttatttatcaaatttatttt 3850983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 278
Target Start/End: Complemental strand, 39426663 - 39426629
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaa 278  Q
    ||||||||||||||||||||||||||||| |||||    
T  39426663 tgttgatttaaccatgtgatatttacttaatcaaa 39426629  T

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Target: scaffold0014 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 244 - 564
Target Start/End: Original strand, 82283 - 82599
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttattttttataaccgttgggtcaaatgctaaaaactcattctgtattg 343  Q
    |||||||||||| |||||||||||||||||||     |||| |||| ||| || |||||||||||||||||||||||||||||||||||||||  |||||    
T  82283 tgttgatttaacgatgtgatatttacttagtc-----cttacttgttacaattcttttttataaccgttgggtcaaatgctaaaaactcattccctattg 82377  T
Q  344 ttatgcttcatttcccttaatataaggaacaactcaccacaaatctc--atgtatatattcttcttttatttctccaaacaagatacacttaacgacta- 440  Q
    |||||| ||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||| |  |  ||||| ||||     
T  82378 ttatgcctcattgcccttaatataaggaacaactcaccacaactctcgtatgtatatattcttcttttatttctccaaacaaaaatcgtttaactactac 82477  T
Q  441 aatacatagcaattgccagtacagagaaaaataactacagatacatactctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatat 540  Q
    |||||| |||||||||||||||   | ||||||||||||||| |||||| | |||||| |||||||| |||  |||||||||||||||||||||||||||    
T  82478 aatacacagcaattgccagtac--ggcaaaataactacagattcatactttaacttcacgtttttctatacgtacaatcattttctctcatccaaaatat 82575  T
Q  541 tgaggtttctgggttacatctcat 564  Q
    ||||||||||||||| ||||||||    
T  82576 tgaggtttctgggttgcatctcat 82599  T

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Target: scaffold0014; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 247 - 459
Target Start/End: Original strand, 86685 - 86900
Alignment:
Q  247 tgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttattttttataaccgttgggtcaaatgctaaaaactcattctgtattgtta 346  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  86685 tgatttaaccatgtgatatttacttagtcaaagccttacttgtcacaattattttttataaccgttgggtcaaatgctaaaaactcattccctattgtta 86784  T
Q  347 tgcttcatttcccttaatataaggaacaactcaccacaaatctc--atgtatatattcttcttttatttctccaaacaagatacacttaacgacta-aat 443  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||| | || |||||| |||| |||    
T  86785 tgcctcatttcccttaatataaggaacaactcaccacaactctcatatgtatatattcttcttttatttctccaaacaaaaaacgcttaactactacaat 86884  T
Q  444 acatagcaattgccag 459  Q
    ||| | ||||||||||    
T  86885 acacaacaattgccag 86900  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 1968477 - 1968534
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatttt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  1968477 tgttgatttaaccatgtgatatttacttagtcaaagccttatttatcaaatttatttt 1968534  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 299
Target Start/End: Original strand, 1953395 - 1953450
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatt 299  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||| |||||||    
T  1953395 tgttgatttaaccatgtgatatttactaagtcaaagtctcatttgtcaaatttatt 1953450  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 521 - 562
Target Start/End: Original strand, 47580330 - 47580370
Alignment:
Q  521 ttttctctcatccaaaatattgaggtttctgggttacatctc 562  Q
    |||||||||||||||||| |||| ||||||||||||||||||    
T  47580330 ttttctctcatccaaaatgttga-gtttctgggttacatctc 47580370  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 314 - 400
Target Start/End: Complemental strand, 11634570 - 11634484
Alignment:
Q  314 ggtcaaatgctaaaaactcattctgtattgttatgcttcatttcccttaatataaggaacaactcaccacaaatctcatgtatatat 400  Q
    ||||||| ||| ||| |||||||  |||| |||||| |||||| |||||||||||||||||||||||||||| |||||  |||||||    
T  11634570 ggtcaaaggcttaaatctcattccctattattatgcctcattttccttaatataaggaacaactcaccacaactctcacatatatat 11634484  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 42258255 - 42258198
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatttt 301  Q
    |||| ||||||||||||||||||||| ||||||||||||||||| ||| |||||||||    
T  42258255 tgttaatttaaccatgtgatatttacctagtcaaagccttatttatcaaatttatttt 42258198  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 244 - 299
Target Start/End: Complemental strand, 11634664 - 11634609
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatt 299  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||    
T  11634664 tgttgatttaatcatgtgatatttacttagtcaaagccctatttatcaaatttatt 11634609  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 11641192 - 11641135
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatttt 301  Q
    |||||||||| | |||||||||||| ||||||||||| |||||||||| |||||||||    
T  11641192 tgttgatttatcaatgtgatatttatttagtcaaagcgttatttgtcaaatttatttt 11641135  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 391
Target Start/End: Complemental strand, 11640585 - 11640538
Alignment:
Q  344 ttatgcttcatttcccttaatataaggaacaactcaccacaaatctca 391  Q
    |||||| |||||| |||||||||||||||||||||||||||| |||||    
T  11640585 ttatgcctcattttccttaatataaggaacaactcaccacaactctca 11640538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 513 - 562
Target Start/End: Complemental strand, 19930225 - 19930176
Alignment:
Q  513 cacaatcattttctctcatccaaaatattgaggtttctgggttacatctc 562  Q
    |||||| ||||||||| ||||||||||||||| ||| |||||||||||||    
T  19930225 cacaattattttctcttatccaaaatattgagttttgtgggttacatctc 19930176  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 19930613 - 19930556
Alignment:
Q  244 tgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatttt 301  Q
    |||| ||||||||||||||||||||| |||||| ||||| |||| ||| |||||||||    
T  19930613 tgttaatttaaccatgtgatatttacctagtcatagcctaatttatcaaatttatttt 19930556  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 42254128 - 42254076
Alignment:
Q  249 atttaaccatgtgatatttacttagtcaaagccttatttgtcacatttatttt 301  Q
    ||||||||||||||||||||  ||||||||||||| ||| ||| |||||||||    
T  42254128 atttaaccatgtgatatttatctagtcaaagccttctttatcaaatttatttt 42254076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 561
Target Start/End: Complemental strand, 42253742 - 42253694
Alignment:
Q  513 cacaatcattttctctcatccaaaatattgaggtttctgggttacatct 561  Q
    |||||| ||||||||  ||| ||||||||||| ||||||||||||||||    
T  42253742 cacaattattttctcatatctaaaatattgagttttctgggttacatct 42253694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 488 - 562
Target Start/End: Complemental strand, 20058277 - 20058204
Alignment:
Q  488 ctctcacttcatgtttttctgtacccacaatcattttctctcatccaaaatattgaggtttctgggttacatctc 562  Q
    ||||||||| |||| ||||| ||  |||||| ||||||||||||||||| |||||| |||||| |||||||||||    
T  20058277 ctctcactttatgtgtttctctaaacacaattattttctctcatccaaattattga-gtttctaggttacatctc 20058204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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