View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2969_low_1 (Length: 639)
Name: NF2969_low_1
Description: NF2969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2969_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 43548879 - 43548455
Alignment:
| Q |
1 |
tatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttcaaaatggaatgtctca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548879 |
tatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttcaaaatggaatgtctca |
43548780 |
T |
|
| Q |
101 |
cagacctgatcgatcataggcatgagtccaatagctttggcacggagaaagcaacctggaacaactggctcctgtttcaacacaattaagaattagcgct |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548779 |
cagacctgatcgatcataggcatgagcccaatagctttggcacggagaaagcaacctggaacaactggctcctgtttcaacacaattaagaattagcgct |
43548680 |
T |
|
| Q |
201 |
ccaaagcagtaaagacaaatctaatgcactaatactagagtctagatagatgaagtcgacttcttacttgatcctctttatgaattgtttccatgcatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548679 |
ccaaagcagtaaagacaaatctaatgcactaatactagagtctagatagatgaagtcgacttcttacttgatcctctttatgaattgtttccatgcatta |
43548580 |
T |
|
| Q |
301 |
ttgtcagattgtattagaggagtaatattttgaaatttactcacatttgcacattttgatcacctccttggaagtaaaagataaggtttcatatgccaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548579 |
ttgtcagattgtattagaggagtaatattttgaaatttactcacatttgcacattttgatcacctccttggaagtaaaagataaggtttcatatgccaag |
43548480 |
T |
|
| Q |
401 |
gattttaaaattcattaattacttc |
425 |
Q |
| |
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|||||| |||||||||||||||||| |
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| T |
43548479 |
gatttttaaattcattaattacttc |
43548455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 444 - 620
Target Start/End: Complemental strand, 43548464 - 43548288
Alignment:
| Q |
444 |
taattacttcttaataagatattagtattatctaaatatattcgttaaaatgttgacacccaccaacatcttgcatctgaaatcacagttagccagatgt |
543 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548464 |
taattacttcttaataagatattagtattatctaaatatattcgttaaaatgttgacacccaccaacatcttgcatctgaaatcacagttagccagatgt |
43548365 |
T |
|
| Q |
544 |
tgactattattatacaatccatttttgaaaaggaaaaagaaaagtacaagagctctagttcaaaatattgataaatg |
620 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43548364 |
tgactattattatacaatccatttttgaaaaggaaaaagaaaagtacaagagctctagttcaaaatattgataaatg |
43548288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 50901289 - 50901072
Alignment:
| Q |
1 |
tatcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttcaaaatggaatgtctca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||| ||||||||||||||||| || |||||||||| |||||| |
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| T |
50901289 |
tatcttgtcatctttctcgccctgagtttcataagaattagcggttgatcattaataatcaaaagagaaattattgctagctacaaaatggaaggtctca |
50901190 |
T |
|
| Q |
101 |
caga-cctgatcgatcataggcatgagtccaatagctttggcacggagaaagcaacctggaacaactggct-cctgtttcaac-acaattaagaattagc |
197 |
Q |
| |
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|| | ||||||| ||||| | ||||||||||||||| |||||| |||||||||||||||||| ||| |||| |||||| || | ||||||||| |||||| |
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| T |
50901189 |
catagcctgatcaatcatcgacatgagtccaatagc-ttggcatggagaaagcaacctggaagaaccggctccctgttccaccaacaattaagtattagc |
50901091 |
T |
|
| Q |
198 |
gct-ccaaagcagtaaaga |
215 |
Q |
| |
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| ||||||||||||||| |
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| T |
50901090 |
catcccaaagcagtaaaga |
50901072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 29369102 - 29368928
Alignment:
| Q |
2 |
atcttgtcatctttctcgccctgaacatcataagaattagtggctgatcaataataatcagaagagaaattattgctatcttcaaaatggaatgtctcac |
101 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||| || | || |||| ||||||| |||| ||| ||||||| ||| |
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| T |
29369102 |
atcttgtcatctttctcaccctgaatttcataagaattagtgattgatcgataatgataaaaaaagaagttattgccatctgggaaagggaatgtttcag |
29369003 |
T |
|
| Q |
102 |
agacctgatcgatcataggcatgagtccaatagctttggcacggagaaagcaacctggaacaactggctcctgtt |
176 |
Q |
| |
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| |||||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||| |||||||||||||| |
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| T |
29369002 |
atacctgatcaatcatgggcatgagaccaatagctttggcacgaagaaagcagcctggaagaactggctcctgtt |
29368928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 457 - 561
Target Start/End: Complemental strand, 29368655 - 29368551
Alignment:
| Q |
457 |
ataagatattagtattatctaaatatattcgttaaaatgttgacacccaccaacatcttgcatctgaaatcacagttagccagatgttgactattattat |
556 |
Q |
| |
|
|||||||| ||| || ||| ||||||||| |||||||| || | | |||||||| |||||||| ||||||||||| | |||||| ||||||||||||||| |
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| T |
29368655 |
ataagatactagaatcatcaaaatatattagttaaaatattaagaaccaccaacttcttgcatttgaaatcacagctggccagaagttgactattattat |
29368556 |
T |
|
| Q |
557 |
acaat |
561 |
Q |
| |
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||||| |
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| T |
29368555 |
acaat |
29368551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 243 - 345
Target Start/End: Complemental strand, 50909917 - 50909815
Alignment:
| Q |
243 |
tagatagatgaagtcgacttcttacttgatcctctttatgaattgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactc |
342 |
Q |
| |
|
||||||||||||||| | | |||||||||||||||| |||||| || ||||||||||||| | |||||||||||| || ||||||| |||||||||| |
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| T |
50909917 |
tagatagatgaagtcatcgtattacttgatcctctttttgaattattaccatgcattattgctaaattgtattagagtagccatattttcaaatttactc |
50909818 |
T |
|
| Q |
343 |
aca |
345 |
Q |
| |
|
||| |
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|
| T |
50909817 |
aca |
50909815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 264 - 365
Target Start/End: Complemental strand, 29368851 - 29368751
Alignment:
| Q |
264 |
ttacttgatcctctttatgaattgtttccatgcattattgtcagattgtattagaggagtaatattttgaaatttactcacatttgcacattttgatcac |
363 |
Q |
| |
|
|||||| ||||||||| |||| |||| ||||| |||||||| | ||||||||| || || || |||| ||||||||||||||||||||||||||| ||| |
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|
| T |
29368851 |
ttacttcatcctctttttgaagtgttaccatgtattattgtgaaattgtattacagtagccat-ttttaaaatttactcacatttgcacattttgaacac |
29368753 |
T |
|
| Q |
364 |
ct |
365 |
Q |
| |
|
|| |
|
|
| T |
29368752 |
ct |
29368751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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