View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2969_low_4 (Length: 393)
Name: NF2969_low_4
Description: NF2969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2969_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 208 - 379
Target Start/End: Original strand, 2592554 - 2592726
Alignment:
| Q |
208 |
ggcgattgaaacctgtagaaggaaaggttatttgattttgaagatacttgcatacaaaagatgtattggatcatttggtatttgactgtacaaagtggtg |
307 |
Q |
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| T |
2592554 |
ggcgattgaaacctgtagaaggaaaggttatttgattttgaagatacttgcatacaaaagatgtattggatcatttggtatttgactgtacaaagtgctg |
2592653 |
T |
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| Q |
308 |
gttttttcttgaatgat-aataatgggtttaccttttcaacatttgtgtctcttttatacaagaaccacaggt |
379 |
Q |
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| T |
2592654 |
gttttttcttgaatgataaataatgggtttgccttttcaacatttgtgtctcttttatacaacaaccacaggt |
2592726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 2592364 - 2592527
Alignment:
| Q |
18 |
aattatatatatctacctaactaggaagagcttgttccttctcattttgattttccacacnnnnnnngattgctgattggaaagatttgagtgaaaatat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2592364 |
aattatatatatctacctaactaggaagagcttgttccttctcattttgattttccacactttttttgattgctgattggaaagatttgagtgaaaatat |
2592463 |
T |
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| Q |
118 |
actgtatatgtatatgtataacgaggcttgaagtgttttgttgagtgttttgacatggaagagg |
181 |
Q |
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| T |
2592464 |
aatgtatatgtatatgtataacgaggcttgaagtgttttgttgagtgttttgacatggaagagg |
2592527 |
T |
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