View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2970_high_10 (Length: 304)
Name: NF2970_high_10
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 44903520 - 44903796
Alignment:
| Q |
18 |
agttttacatgataagttatagcttcatcacttgtctgttcatctgtttgagtaaaaactgcaacaccatgaacaaatgcaaacgaacctgttcctccta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44903520 |
agttttacatgataagttatagcttcatcacttgtctgttcatctgtttgagtaaaaactgcaacaccatgagcaaatgcaaacgaacctgttcctccta |
44903619 |
T |
|
| Q |
118 |
ccactctgaattcttctctttcctcatgagcaactttgattgcttgcacactcaaactacctgaatgatctggtgtatcaaaagtgagatacaaaacatt |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44903620 |
ccactctgaattcttctctttccttatgagcaactttgattgcttgcacactcaagctacctgaatgatctggtgtatcaaaagtgagatacaaaacatt |
44903719 |
T |
|
| Q |
218 |
gaattctgattgctgaaactgttccacagggattatgaatccttgtgcttttcctacaacctttgatgtgttctctg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44903720 |
gaattctgattgctgaaactgttccacagggattatgaatccttgtgcttttcctacaacctttgatgtgttctctg |
44903796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 44916992 - 44917268
Alignment:
| Q |
18 |
agttttacatgataagttatagcttcatcacttgtctgttcatctgtttgagtaaaaactgcaacaccatgaacaaatgcaaacgaacctgttcctccta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44916992 |
agttttacatgataagttatagcttcatcacttgtctgttcatctgtttgagtaaaaactgcaacaccatgagcaaatgcaaacgaacctgttcctccta |
44917091 |
T |
|
| Q |
118 |
ccactctgaattcttctctttcctcatgagcaactttgattgcttgcacactcaaactacctgaatgatctggtgtatcaaaagtgagatacaaaacatt |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44917092 |
ccactctgaattcttctctttccttatgagcaactttgattgcttgcacactcaagctacctgaatgatctggtgtatcaaaagtgagatacaaaacatt |
44917191 |
T |
|
| Q |
218 |
gaattctgattgctgaaactgttccacagggattatgaatccttgtgcttttcctacaacctttgatgtgttctctg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44917192 |
gaattctgattgctgaaactgttccacagggattatgaatccttgtgcttttcctacaacctttgatgtgttctctg |
44917268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University