View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_high_12 (Length: 297)
Name: NF2970_high_12
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 50822238 - 50821965
Alignment:
| Q |
9 |
agcagagacgttatgttatggctttggtccgggaattgaaagcatggtggaacaaatggtttacaacaaaaagggtgaacacggagggttttacacgtgt |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50822238 |
agcagaaacgttatgttatggctttggtccgggaattgaaagcatggtggaacaaatggtttacaacaaaaagggtgaacacggagggttttacacgtgt |
50822139 |
T |
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| Q |
109 |
ataattcaaaaggaaggaaaatgtgccagtgttgctgtttttagggcacatgcaagaaatgggtttgtggaaatccccattgtggctaccatggaatcct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50822138 |
ataattcaaaaggaaggaaaatgtgccagtgttgctgtttttagggcacatgcaagaaatgggtttgtggaaatccccattgtggctaccatggaatcct |
50822039 |
T |
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| Q |
209 |
ttagatcgcagggtttgtgtaaaagattgattcactcgattgagaactgtgtaaaacgattaggtattcaccat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50822038 |
ttagatcgcagggtttgtgtaaaagattgattcactcgattgagaactgtgtaaaacgattaggtattcaccat |
50821965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 50853623 - 50853896
Alignment:
| Q |
9 |
agcagagacgttatgttatggctttggtccgggaattgaaagcatggtggaacaaatggtttacaacaaaaagggtgaacacggagggttttacacgtgt |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853623 |
agcagaaacgttatgttatggctttggtccgggaattgaaagcatggtggaacaaatggtttacaacaaaaagggtgaacacggagggttttacacgtgt |
50853722 |
T |
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| Q |
109 |
ataattcaaaaggaaggaaaatgtgccagtgttgctgtttttagggcacatgcaagaaatgggtttgtggaaatccccattgtggctaccatggaatcct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853723 |
ataattcaaaaggaaggaaaatgtgccagtgttgctgtttttagggcacatgcaagaaatgggtttgtggaaatccccattgtggctaccatggaatcct |
50853822 |
T |
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| Q |
209 |
ttagatcgcagggtttgtgtaaaagattgattcactcgattgagaactgtgtaaaacgattaggtattcaccat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50853823 |
ttagatcgcagggtttgtgtaaaagattgattcactcgattgagaactgtgtaaaacgattaggtattcaccat |
50853896 |
T |
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