View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_high_18 (Length: 254)
Name: NF2970_high_18
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_high_18 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 34660693 - 34660931
Alignment:
| Q |
16 |
catagggctccctttaggtttctcagtcctatagaatggtgaaccaaacacaaaggccacaatggacaataacatgacaattgttggtatgccaaatccc |
115 |
Q |
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| T |
34660693 |
catagggctccctttaggtttctcagtcctatagaatggtgaaccaaacacaaaggccacaatggacaataacatgacaattgttggtatgccaaatccc |
34660792 |
T |
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| Q |
116 |
caaccccaaccagtattgtcttgaatgtaaacaacaatggtcaaagcacttaaagaagctatacccatgaagaaaaaataccaattgaaaatgttccatt |
215 |
Q |
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| T |
34660793 |
caaccccaaccagtattgtcttgaatgtaaacaacaatggtcaaagcacttaaagaagctatacccatgaagaaaaaataccaattgaaaatgttccatt |
34660892 |
T |
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| Q |
216 |
ttcttgatgctacaccnnnnnnngacatatcaaattgtt |
254 |
Q |
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| T |
34660893 |
ttcttgatgctacacctttttttgacatatcaaattgtt |
34660931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 34646317 - 34646455
Alignment:
| Q |
93 |
caattgttggtatgccaaatccccaaccccaaccagtattgtcttgaatgtaaacaacaatggtcaaagcacttaaagaagctatacccatgaagaaaaa |
192 |
Q |
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| T |
34646317 |
caatggttggaatcccaagtccccaaccccaacccacattgtcttgaacataaaccacaatggttaaagcacttagagaagcaaaacccatgatgaaaaa |
34646416 |
T |
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| Q |
193 |
ataccaattgaaaatgttccattttcttgatgctacacc |
231 |
Q |
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| T |
34646417 |
gtaccaattgaagaggttccatttcctagaagctacacc |
34646455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 34666096 - 34666202
Alignment:
| Q |
113 |
ccccaaccccaaccagtattgtcttgaatgtaaacaacaatggtcaaagcacttaaagaagctatacccatgaagaaaaaataccaattgaaaatgttcc |
212 |
Q |
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| T |
34666096 |
ccccaaccccatcccatatgatcttgaatgtaaaccacaatggtcaaagcacttaatgaagcaaatcccatgcaaaaaaagtaccaattgaagaggttcc |
34666195 |
T |
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| Q |
213 |
attttct |
219 |
Q |
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| T |
34666196 |
attttct |
34666202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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