View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_high_19 (Length: 252)
Name: NF2970_high_19
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_high_19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 32206265 - 32206028
Alignment:
| Q |
16 |
catgagttacatcacatcttacaaatttgactaatctttgtcagctaaatattacgccctcgtgcagaatgagttgcatccgtagcaattcgaccaannn |
115 |
Q |
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| T |
32206265 |
catgagttacatcacatcttacaaatttgactaatctttgtcagctaaatattacgccctcgtgcagaatgagttgcatccttagcaattcgaccaaatt |
32206166 |
T |
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| Q |
116 |
nnnnn-gctaattatgactacaatccattatataaatctatacttggttcatgtcatatgcatcaaaatctaaaagatgaatgatagatatattttgaag |
214 |
Q |
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| T |
32206165 |
ttttttgctaattatgactacaatccattatataaatctatacttggttcatgtcatatgcatcaaaatctaaaagatgaatgatagatatattttgaag |
32206066 |
T |
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| Q |
215 |
agatgtacataccttattgtatccattatcaaccacgt |
252 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
32206065 |
agatatacataccttattgtatccattatcaaccacgt |
32206028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 32174767 - 32174796
Alignment:
| Q |
223 |
ataccttattgtatccattatcaaccacgt |
252 |
Q |
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| T |
32174767 |
ataccttattgtatccattatcaaccacgt |
32174796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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