View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2970_high_4 (Length: 451)

Name: NF2970_high_4
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2970_high_4
NF2970_high_4
[»] chr1 (2 HSPs)
chr1 (191-425)||(9975483-9975715)
chr1 (17-188)||(9975786-9975955)
[»] chr7 (3 HSPs)
chr7 (19-98)||(7112713-7112792)
chr7 (134-185)||(7112831-7112882)
chr7 (375-425)||(7113053-7113103)
[»] chr8 (2 HSPs)
chr8 (48-98)||(41484923-41484973)
chr8 (134-185)||(41485013-41485064)
[»] chr4 (1 HSPs)
chr4 (23-85)||(9410548-9410610)
[»] chr6 (1 HSPs)
chr6 (382-410)||(19855786-19855814)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 191 - 425
Target Start/End: Complemental strand, 9975715 - 9975483
Alignment:
Q  191 aaatcatatggataagtagcctctattatcatgttcatattannnnnnnn-acttatgttttatcatgtattatatattaaatacttccaacacttccat 289  Q
    |||||||||||||||||||||| ||||||||||||||||||          |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9975715 aaatcatatggataagtagcctatattatcatgttcatattttttttttttacttatgttttatcatatattatatattaaatacttccaacacttccat 9975616  T
Q  290 atgatttgtatcnnnnnnnnnnnnnnacaatgataacgtaccaaaccaaccattaactaatattccatgtttccacaaaataattatacaggcaacagag 389  Q
    ||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9975615 atgatttgtatctaattgttttt---acaatgataacgtaccaaaccaaccattaactaatattccatgtttccacaaaataattatacaggcaacagag 9975519  T
Q  390 attcagatgcacactcacaaatctcatacaacttct 425  Q
    ||||||||||||||||||||||||||||||||||||    
T  9975518 attcagatgcacactcacaaatctcatacaacttct 9975483  T

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Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 9975955 - 9975786
Alignment:
Q  17 atatatctgctatgcaatggataaaaattagaacacatttttaaaagaaaaaatagaatgagatttttgttatagatgaaaaatgtggtaaaatagaatg 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9975955 atatatctgctatgcaatggattaaaattagaacacatttttaatagaaaaaatagaatgagatttttgttatagatg-aaaatgtggtaaaatagaatg 9975857  T
Q  117 agannnnnnngttatagatgaaataagagcctccaactgatcatcctaacccatatgcaattcccatcagat 188  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9975856 aga-ttttttgttatagatgaaataagagcctccaactgatcatcctaacccatatgcaattcccatcagat 9975786  T

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Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 7112713 - 7112792
Alignment:
Q  19 atatctgctatgcaatggataaaaattagaacacatttttaaaagaaaaaatagaatgagatttttgttatagatgaaaa 98  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  7112713 atatctgatatgcaatggattaaaattagaacacatttttaaaagaaaaaatagaatgagatctttattatagatgaaaa 7112792  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 7112831 - 7112882
Alignment:
Q  134 atgaaataagagcctccaactgatcatcctaacccatatgcaattcccatca 185  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  7112831 atgaaataagggcctccaactgatcatcctaacccatatgtaatttccatca 7112882  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 7113053 - 7113103
Alignment:
Q  375 atacaggcaacagagattcagatgcacactcacaaatctcatacaacttct 425  Q
    ||||| ||||| |||||||||||||||||||||||||  ||||||||||||    
T  7113053 atacaagcaacggagattcagatgcacactcacaaattccatacaacttct 7113103  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 41484923 - 41484973
Alignment:
Q  48 aacacatttttaaaagaaaaaatagaatgagatttttgttatagatgaaaa 98  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||||||    
T  41484923 aacacatttttaaaagcaaaaatagaatgaaatctttgttatagatgaaaa 41484973  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 41485013 - 41485064
Alignment:
Q  134 atgaaataagagcctccaactgatcatcctaacccatatgcaattcccatca 185  Q
    ||||||||||||||||||| ||| ||||||||||| |||| |||||||||||    
T  41485013 atgaaataagagcctccaaatgaccatcctaacccttatgaaattcccatca 41485064  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 9410548 - 9410610
Alignment:
Q  23 ctgctatgcaatggataaaaattagaacacatttttaaaagaaaaaatagaatgagatttttg 85  Q
    |||||||||||| ||| | |||| |  |||||||||||||||||||||||||| |||| ||||    
T  9410548 ctgctatgcaattgattagaattcggccacatttttaaaagaaaaaatagaataagatctttg 9410610  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 410
Target Start/End: Original strand, 19855786 - 19855814
Alignment:
Q  382 caacagagattcagatgcacactcacaaa 410  Q
    |||||||||||||||||||||||||||||    
T  19855786 caacagagattcagatgcacactcacaaa 19855814  T

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