View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_high_6 (Length: 366)
Name: NF2970_high_6
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 3 - 365
Target Start/End: Complemental strand, 9029053 - 9028691
Alignment:
| Q |
3 |
ggtattattttcgccattaatatcgagcaataaaactttatcctgtttttgtaaactttttagaagagctttatctgtaaacttattgtgtgcaatcata |
102 |
Q |
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| T |
9029053 |
ggtattattttcgccattaatatcgagcaataaaactttatcaagtttttataaactttttagaagagctttatctgtaaacttattgtgtgcaatcata |
9028954 |
T |
|
| Q |
103 |
acctatatataggcgtacgtgggtgtgaaaatccagggtttgtagtccattattaaaagagaacaaatagccaacatgacaaatannnnnnnggtaagtt |
202 |
Q |
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| T |
9028953 |
acttatatataggcgtacgtgggtgtgaaaatccagggtttatagtccattattaaaagagaacaaatacccaacatgacaaatatttatttggtaagtt |
9028854 |
T |
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| Q |
203 |
atacacaacatgccatttgatttagtcaagaaaaatgacatttgatattacattttgaacatcaagaattttgtatgatgtcatgataatgtgtcattca |
302 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
9028853 |
atacacaacatgccatttgatttagtcaagaaaaatggcatttgatattacattttgaacatcaagaattttttatgatgtcatgataatgtgtcactca |
9028754 |
T |
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| Q |
303 |
tatgtaataaatgttcaacaggcaatattaccgcatcgcgacaaatcaagattcatatttcga |
365 |
Q |
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| T |
9028753 |
tatgtaataaatgttcaacaggcaatactaccgcatcgcgacaaatcaagattcatatttcga |
9028691 |
T |
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