View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_high_8 (Length: 325)
Name: NF2970_high_8
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 27384366 - 27384641
Alignment:
| Q |
1 |
ctcaaacacctttttt-ctcctatgtttattcatcctttaatactatgtg-ttttggactttatcctcaaaattatcagaatttggctacttattgagaa |
98 |
Q |
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| T |
27384366 |
ctcaaacacctttttttctcctatgtttattcatcctttaattttattttattttggactttatccttaaaattatcagaatttggctacttattgagaa |
27384465 |
T |
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| Q |
99 |
taatctaaagattaattcttttcaaagctaacatctttggcttgagtggtcgttgacacttgacaggataaaggtgatggacgttgatcagacacccctt |
198 |
Q |
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| T |
27384466 |
taatatgaagattaattcttttcaaagctaacatcttcggcttgagtggtcgttgacacttgacaggataaaggtgatggacgttgatcagacacccctt |
27384565 |
T |
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| Q |
199 |
caatggaagcgggttgcctttaaacactttcacgatcaagtaaacgtgtgttgaatatgcgtgcttttcaaattag |
274 |
Q |
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| T |
27384566 |
caataaaagtgggttacctttaaacactttcacgatcaagtaaatatgtgtcgaatatgcatgcttttctaattag |
27384641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 27390856 - 27391034
Alignment:
| Q |
1 |
ctcaaacaccttttttctcctatgtttattcatcctttaatactatgtgttttggactttatcctcaaaattatcagaatttggctactt---attgag- |
96 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
27390856 |
ctcaaacaccttttttcccctatttttattcatcctttaata--ttttcttttggactttatccttaaaattatcagaatttggctacttgagattgaga |
27390953 |
T |
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| Q |
97 |
aataatctaaagattaattcttttcaaagctaacatctttggcttgagtggtcgttgacacttgacaggataaaggtgatggacgttga |
185 |
Q |
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| T |
27390954 |
aataatctgaagattaattcttttc-aagctaacatcttcggcttgagtggt-------agttgacaggataaaggtgatggacgttga |
27391034 |
T |
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