View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2970_high_9 (Length: 314)
Name: NF2970_high_9
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 50 - 304
Target Start/End: Complemental strand, 5629997 - 5629741
Alignment:
| Q |
50 |
tcacaacttcactctcatctctgtcttcgaatcctcgttgtctggagaacaatttcaggnnnnnnnnn-ctaccaacttcttccatattgacattattat |
148 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| ||| |
|
|
| T |
5629997 |
tcacaacttcactctcatctctgtctccgaatccttgttgtctggagaacaatttcatgtattttttttctaccaacttcttccatattgacattcttac |
5629898 |
T |
|
| Q |
149 |
tttcttaatggtttcaacttccatgtttctttgttaacattcaatatagtgcataatgtgtt--tgtatttggtcatcgcaaatgaataaatcaggggtt |
246 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5629897 |
tttcttaatggtttcaactttcatgtttctttgttaacattcaatatagtgcatgttgtgtttgtgtatttggtcatcgcaaatgaataaatcaggggtt |
5629798 |
T |
|
| Q |
247 |
aaacccctcttatagctcctgacaaaaagttctggctatgaccctgtcaacctctctg |
304 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| || |||| ||||||||| |||| |
|
|
| T |
5629797 |
aaacccctcgtatagctcctgac-aaaagttctggttacgaccttgtcaacctgtctg |
5629741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 50 - 304
Target Start/End: Complemental strand, 21174994 - 21174738
Alignment:
| Q |
50 |
tcacaacttcactctcatctctgtcttcgaatcctcgttgtctggagaacaatttcaggnnnnnnnnn-ctaccaacttcttccatattgacattattat |
148 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| ||| |
|
|
| T |
21174994 |
tcacaacttcactctcatctctgtctccgaatccttgttgtctggagaacaatttcatgtattttttttctaccaacttcttccatattgacattcttac |
21174895 |
T |
|
| Q |
149 |
tttcttaatggtttcaacttccatgtttctttgttaacattcaatatagtgcataatgtgtt--tgtatttggtcatcgcaaatgaataaatcaggggtt |
246 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21174894 |
tttcttaatggtttcaactttcatgtttctttgttaacattcaatatagtgcatgttgtgtttgtgtatttggtcatcgcaaatgaataaatcaggggtt |
21174795 |
T |
|
| Q |
247 |
aaacccctcttatagctcctgacaaaaagttctggctatgaccctgtcaacctctctg |
304 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| || |||| ||||||||| |||| |
|
|
| T |
21174794 |
aaacccctcgtatagctcctgac-aaaagttctggttacgaccttgtcaacctgtctg |
21174738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University