View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2970_low_1 (Length: 627)
Name: NF2970_low_1
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 319 - 619
Target Start/End: Complemental strand, 29259618 - 29259323
Alignment:
| Q |
319 |
gcttaaaacgcatatagtttgagacgtatatcatggagattgtaccaccaactactgccgtctgtttttaaaggttcattctatacgaaatatatgcatg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29259618 |
gcttaaaacgcatatagtttgagacgtatatcatggagattgtaccaccaactactaccgtctgtttttaaaggttcattctatacgaaatat--gcatg |
29259521 |
T |
|
| Q |
419 |
cgtttcttgttcttcttccttttgttgctacaagataggtgggtcctcttccaactatacatgtttgtttgtactttgtagttttggctttggggtgggg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29259520 |
cgtttcttgttcttcttccttttgttgctacaagataggtgggtcctcttccaactatacatgtttgtttgtactttgtagttttggctttggggtgggg |
29259421 |
T |
|
| Q |
519 |
aagggaccactttacacatattaggctatgctcgtactactgtagtactgaccttccaacttctactatttgatgttcccacattttcttttgcctatgc |
618 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
29259420 |
aagggaccactttacacatattaggctatactcg---tactgtagtaatgaccttccaacttctacaatttgatgttcccacattttcttttgcccatgc |
29259324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 29259867 - 29259719
Alignment:
| Q |
20 |
atgatcaattaatacattcctctttttctctcaaaaaataaatacatttctcttttgcaacttaattattaatgtttgaccatataaatgtattcaaaat |
119 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29259867 |
atgatcaattaatacatttctctttttctctcaaaaaataaatacatttctcttttgcaacttaattattaatgtttgaccatataaatgtattcaaaat |
29259768 |
T |
|
| Q |
120 |
ggagtacaaagtattaaatagataaaat--ttaattctctctatcatta |
166 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
29259767 |
gaagtacaaagtattaaatagataaaattataaattctctctatcatta |
29259719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 29259717 - 29259673
Alignment:
| Q |
203 |
ataagctaaacttggattactttaatgaaggaaaacgtaaattgc |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29259717 |
ataagctaaacttggattactttaatgaaggaaaacgtaaattgc |
29259673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 408 - 442
Target Start/End: Original strand, 29261230 - 29261264
Alignment:
| Q |
408 |
atatatgcatgcgtttcttgttcttcttccttttg |
442 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
29261230 |
atatatgcatgcgtttcttgttcttctttcttttg |
29261264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University