View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_low_15 (Length: 280)
Name: NF2970_low_15
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 228
Target Start/End: Complemental strand, 42144229 - 42144021
Alignment:
| Q |
20 |
agttgctaggcttcctgtgttccacaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttaggatcccgatctcc |
119 |
Q |
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| T |
42144229 |
agttgctaggcttcctgtgttccacaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttagggtcccgatctcc |
42144130 |
T |
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| Q |
120 |
tttttggaatctttgatatggattgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttacttttatcaactatatac |
219 |
Q |
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| T |
42144129 |
tttttggaatctttgatatggattgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttacttttatcaactatatac |
42144030 |
T |
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| Q |
220 |
attcaaccc |
228 |
Q |
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||||||||| |
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| T |
42144029 |
attcaaccc |
42144021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 42156175 - 42155977
Alignment:
| Q |
21 |
gttgctaggcttcctgtgttccacaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttaggatcccgatctcct |
120 |
Q |
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||||||||||||||||||||| | ||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| || | |||| |
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| T |
42156175 |
gttgctaggcttcctgtgttctataaacaaagggatttcatgttttatcctgcatgggcatttggattacccatatggattcttaggattcctctttcct |
42156076 |
T |
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| Q |
121 |
ttttggaatctttgatatggattgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttacttttatc-aactatata |
218 |
Q |
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| T |
42156075 |
ttttggaatcagcgatatggattgttcttacatattttacaattgggttcgctccttctgctagcaggtaatatgagtgtacttttttcgaactatata |
42155977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 218
Target Start/End: Complemental strand, 42175342 - 42175149
Alignment:
| Q |
26 |
taggcttcctgtgttccacaaacagagggatttcttgttttaccctgcatgggcatttggattacctatatggattcttaggatcccgatctcctttttg |
125 |
Q |
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|||||| ||||||||| ||||||| |||||| || |||||||||||||||||||||||| |||||| |||||||||||||||||||| | |||||| || |
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| T |
42175342 |
taggctacctgtgttctacaaacaaagggatatcatgttttaccctgcatgggcatttgcattacccatatggattcttaggatccctctttcctttatg |
42175243 |
T |
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| Q |
126 |
gaatctttgatatggattgtacttacatattttacagttgggtttgctccttctgctagcaggtaatatgagtttacttttatc-aactatata |
218 |
Q |
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||||| |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||| |
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| T |
42175242 |
gaatcagcgatatggattgttcttacatattttacaattgggttcgctccttctgctagcaggtaatatgagtgtacttttttcgaactatata |
42175149 |
T |
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