View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_low_17 (Length: 261)
Name: NF2970_low_17
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_low_17 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 9028470 - 9028711
Alignment:
| Q |
20 |
aaacgctcaaccaaacatacacttaactgactaacacaaaaaactggcttaccaatttcatatatacaaggnnnnnnnggattctactctccgaacatta |
119 |
Q |
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| T |
9028470 |
aaacgctcaaccaaacagacacttaatcgactaacacaaaaaactggcttaccgatttcatatatacaaggtttttttggattccactctcctaacatta |
9028569 |
T |
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| Q |
120 |
gtttgtattccttcttatnnnnnnnnttaatattaatttgccaacnnnnnnnccttcaacaaatttcctcgattgaaattaatcatatttgagacttgcc |
219 |
Q |
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| T |
9028570 |
gtttgtattccttcttgtaaaaaaaattaatattaatttgccaaccttttttccttcaacaaatttcctcaattaaaagtaatcatatttgagacttgcc |
9028669 |
T |
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| Q |
220 |
atatatagcaagtgtcggtagtcgaaatatgaatcttgattt |
261 |
Q |
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| T |
9028670 |
atatatagcaagtgtcggtaatcgaaatatgaatcttgattt |
9028711 |
T |
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