View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2970_low_2 (Length: 614)

Name: NF2970_low_2
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2970_low_2
NF2970_low_2
[»] chr4 (4 HSPs)
chr4 (47-605)||(11662081-11662648)
chr4 (452-515)||(19100061-19100124)
chr4 (462-491)||(21205415-21205444)
chr4 (39-67)||(11662039-11662067)
[»] chr5 (2 HSPs)
chr5 (410-532)||(19406891-19407016)
chr5 (232-276)||(19406706-19406750)
[»] chr7 (3 HSPs)
chr7 (453-522)||(13068872-13068941)
chr7 (463-522)||(39296983-39297042)
chr7 (415-529)||(41221224-41221338)
[»] chr2 (2 HSPs)
chr2 (467-517)||(31059913-31059963)
chr2 (463-515)||(31068362-31068414)
[»] chr6 (1 HSPs)
chr6 (459-513)||(18736669-18736723)


Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 47 - 605
Target Start/End: Original strand, 11662081 - 11662648
Alignment:
Q  47 ttttaatttattcacaattttataaacaataatttaggtttgccacataaatttcaccaatgaaatgacaggagtctcaactacaactannnnnnnnctt 146  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||         |||    
T  11662081 tttttatttattcacaattttataaacaataatttaggtttgtcacataaatttcaccaatgaaaggacaggagtctcaactacaact-ttttttttctt 11662179  T
Q  147 tctattattcagcaata------------------tttccattgtctctattgaaaggtaatatatataatgaaacttaagaaaagaaaaatattgacct 228  Q
    |||||||||||||||||                  |||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  11662180 tctattattcagcaatacttttctcttttcgaatatttccattgtctctattgaaaggtaatatatataattaaactttagaaa-gaaaaatattgacct 11662278  T
Q  229 ctaatgatcatcaaaagtttcatgtgagattttcactaaggttaagtggattaaaaagatatgcaaaacgtattgatgtatgtaagaggcatttacaata 328  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11662279 ctaattatcatcaaaagtttcatgtgagattttcactaaggttaagtgaattaaaaagatatgcaaaacgtattgatgtatgtaagaggcatttacaata 11662378  T
Q  329 attcttaaatttaaaatgactttttccaactctatatataaatacagaaggctattacattgcacttaacaatgcatgaatttttgcttataaagtgatc 428  Q
    ||||||||||||| ||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  11662379 attcttaaatttataatgactttttccaactctata----aatacagaaggctattaaattgcacttaacaatgcatggatttttgcttataaagtgatc 11662474  T
Q  429 gacaaattttttatttattattcgcaaaggagaaaaaatatggctgaaattctcaaatttgttcatgctttagtcatctttctttctttaattggtcttg 528  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11662475 gacaaattttttaattattattcgcaaaggagaaaaaatatggctgaaattctcaaatttattcatgctttagtcatctttctttctttaattggtcttg 11662574  T
Q  529 taacgagcggcggcagtaagttatttttctcatctattttaaattatcttcattatcatacccataatcgttcatct 605  Q
    ||   | | | ||||||||||||||||| |||||||||||||||||| ||| |||| |||||||||||| |||||||    
T  11662575 ta---atcagtggcagtaagttatttttttcatctattttaaattattttctttattatacccataatcattcatct 11662648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 515
Target Start/End: Original strand, 19100061 - 19100124
Alignment:
Q  452 gcaaaggagaaaaaatatggctgaaattctcaaatttgttcatgctttagtcatctttctttct 515  Q
    |||||||||||||||||||||| ||||| |||  |||||| |||||||  |||| |||||||||    
T  19100061 gcaaaggagaaaaaatatggctaaaattttcatctttgtttatgctttgatcatttttctttct 19100124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 491
Target Start/End: Original strand, 21205415 - 21205444
Alignment:
Q  462 aaaaatatggctgaaattctcaaatttgtt 491  Q
    ||||||||||||||||||||||||||||||    
T  21205415 aaaaatatggctgaaattctcaaatttgtt 21205444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 11662039 - 11662067
Alignment:
Q  39 tctttatattttaatttattcacaatttt 67  Q
    |||||||||||||||||||||||||||||    
T  11662039 tctttatattttaatttattcacaatttt 11662067  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 410 - 532
Target Start/End: Original strand, 19406891 - 19407016
Alignment:
Q  410 ttttgcttataaagtgatcgacaaattttttatttattattcgcaaaggagaaa---aaatatggctgaaattctcaaatttgttcatgctttagtcatc 506  Q
    |||| |||||||| |||||  | |||||| ||||||||||  |||||| |||||   |||||||| ||||||||||||||||   ||||| ||| |||||    
T  19406891 ttttacttataaaatgatcatccaattttctatttattatatgcaaagaagaaagttaaatatggttgaaattctcaaattttcccatgccttaatcatc 19406990  T
Q  507 tttctttctttaattggtcttgtaac 532  Q
    ||||||| ||||| || |||||||||    
T  19406991 tttctttttttaagtgctcttgtaac 19407016  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 19406706 - 19406750
Alignment:
Q  232 atgatcatcaaaagtttcatgtgagattttcactaaggttaagtg 276  Q
    |||||||||||||||||||| ||||||||| |||||| |||||||    
T  19406706 atgatcatcaaaagtttcatatgagatttttactaagattaagtg 19406750  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 13068872 - 13068941
Alignment:
Q  453 caaaggagaaaaaatatggctgaaattctcaaatttgttcatgctttagtcatctttctttctttaattg 522  Q
    |||| |||||||||||||||| ||||||| |||||| ||||||||||  |||||||||||| | ||||||    
T  13068872 caaaagagaaaaaatatggctaaaattcttaaatttattcatgctttgatcatctttctttttctaattg 13068941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 463 - 522
Target Start/End: Complemental strand, 39297042 - 39296983
Alignment:
Q  463 aaaatatggctgaaattctcaaatttgttcatgctttagtcatctttctttctttaattg 522  Q
    ||||||||| ||||||||  |||||||||||||||||  |||||||| ||||||||||||    
T  39297042 aaaatatggttgaaattcctaaatttgttcatgctttcatcatctttttttctttaattg 39296983  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 529
Target Start/End: Original strand, 41221224 - 41221338
Alignment:
Q  415 cttataaagtgatcgacaaattttttatttattattcgcaaaggagaaaaaatatggctgaaattctcaaatttgttcatgctttagtcatctttctttc 514  Q
    |||||||| |||||  | ||||| || ||||||||   |||||||||||||||||||   ||||||||||||| |   |||||||  | |||||||||||    
T  41221224 cttataaaatgatcagctaatttcttgtttattatatacaaaggagaaaaaatatggtgaaaattctcaaattcgccgatgctttgattatctttctttc 41221323  T
Q  515 tttaattggtcttgt 529  Q
    | |||||| ||||||    
T  41221324 tctaattgttcttgt 41221338  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 517
Target Start/End: Original strand, 31059913 - 31059963
Alignment:
Q  467 tatggctgaaattctcaaatttgttcatgctttagtcatctttctttcttt 517  Q
    ||||||||||||||||||||| ||| |||||||  ||||||||||||||||    
T  31059913 tatggctgaaattctcaaattcgtttatgctttgatcatctttctttcttt 31059963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 515
Target Start/End: Original strand, 31068362 - 31068414
Alignment:
Q  463 aaaatatggctgaaattctcaaatttgttcatgctttagtcatctttctttct 515  Q
    ||||||||||||||||||  ||||||||| |||||||| ||| ||||||||||    
T  31068362 aaaatatggctgaaattccaaaatttgtttatgctttaatcagctttctttct 31068414  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 18736669 - 18736723
Alignment:
Q  459 agaaaaaatatggctgaaattctcaaatttgttcatgctttagtcatctttcttt 513  Q
    ||||||||||||||| || |||||| ||||||| |||||||  ||||||||||||    
T  18736669 agaaaaaatatggctcaatttctcatatttgtttatgctttgatcatctttcttt 18736723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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