View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_low_25 (Length: 244)
Name: NF2970_low_25
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 41198732 - 41198507
Alignment:
| Q |
1 |
atgattgacgaagattacacatcagaatgacagtcaacttgaaagtcaaataaggggtctttatcttgatgtaaaatagatatgaaaattgaaaaccaac |
100 |
Q |
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| T |
41198732 |
atgattgacgaagattacacatcagaatgacagtcaacttgaaagtcaaataaggggtctttatcttgatgtaaaatagatatgaaaattgaaaaccaac |
41198633 |
T |
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| Q |
101 |
acattcatcatagcaaacaatgattcatcagcaaaaaatcaaatatcaggcatgaaaagtttagcaattatataaattgaatacagtgatgatgaaattc |
200 |
Q |
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| T |
41198632 |
acattcatcatagcaaacaatgattcatcagcaaaaaatcaaatatcaggcatgaaaagtttagcaattatataaattgaatacagtgatgatgaaattc |
41198533 |
T |
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| Q |
201 |
ataccatttatcttctttgagaattc |
226 |
Q |
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| T |
41198532 |
ataccatttatcttctttgagaattc |
41198507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 41208590 - 41208525
Alignment:
| Q |
70 |
tgtaaaatagatatgaaaattgaaaaccaacacattcatcatagcaaacaatgattcatcagcaaaa |
136 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
41208590 |
tgtaaaatagatatgaaa-ttgaaaaccaacacattcatcatagcaaacaatgatgcatcaacaaaa |
41208525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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