View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_low_26 (Length: 237)
Name: NF2970_low_26
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 47701225 - 47701429
Alignment:
| Q |
17 |
atgaattacttacagtacaaaattaaggcataatgaaaaaatatccacttaacaagaaatggaaattaaattcaaatacttactatgtcccaacgacttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47701225 |
atgaattacttacagtacaaaattaaggcataatgaaaaaatatccacttaacaagaaatggaaattaaattcaaatacttactatgtcccaacgacttt |
47701324 |
T |
|
| Q |
117 |
atctgtatttacttgagtttgatccacaggaattagcctggccatacc-aaatctgatattttaggattcattttttcatcctaagagaatgttacttgc |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47701325 |
atctgtatttacttgagtttgatccacaagaattagcctggccataccaaaatctgatattttaggattcattttttcatcc-aagagaatgttacttgc |
47701423 |
T |
|
| Q |
216 |
tttaag |
221 |
Q |
| |
|
|||||| |
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|
| T |
47701424 |
tttaag |
47701429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 47744038 - 47744196
Alignment:
| Q |
63 |
acttaacaagaaatggaaattaaattcaaatacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaggaattagcctggccata |
162 |
Q |
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||||||||||| |||||||| | |||| |||||||||||||| ||||||| ||||| |||||| |||||||||||||| ||| ||| ||| ||||| ||| |
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| T |
47744038 |
acttaacaagatatggaaatcatattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaata |
47744137 |
T |
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| Q |
163 |
cc-aaatctgatattttaggattcattttttcatcctaagagaatgttacttgctttaag |
221 |
Q |
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|| ||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||||| |
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| T |
47744138 |
ccaaaatcagatattttaggattcaacttttcgtcc-aagagaatgttacttgctttaag |
47744196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 63 - 221
Target Start/End: Original strand, 47716274 - 47716432
Alignment:
| Q |
63 |
acttaacaagaaatggaaattaaattcaaatacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaggaattagcctggccata |
162 |
Q |
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||||||||||| |||||||| | || |||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||| ||| ||| ||||| ||| |
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| T |
47716274 |
acttaacaagatatggaaatcatatcataatacttactatgttccaacgattttatttgtatttacttgagtttgatcgacaagaagtagtctggcgata |
47716373 |
T |
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| Q |
163 |
cc-aaatctgatattttaggattcattttttcatcctaagagaatgttacttgctttaag |
221 |
Q |
| |
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|| |||||||||||||||||||||| |||||| | ||||||||||||||| |||||||| |
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| T |
47716374 |
ccaaaatctgatattttaggattcaatttttcgt-ctaagagaatgttacccgctttaag |
47716432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 47711552 - 47711681
Alignment:
| Q |
92 |
atacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaggaattagcctggccataccaaa-tctgatattttaggattcatttt |
190 |
Q |
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||||||||||||| ||||||| ||||| ||||||||||||||||||||| | | ||| ||| ||||| || ||||| ||||||||||||||||||| || |
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| T |
47711552 |
atacttactatgttccaacgattttatttgtatttacttgagtttgatcgataagaagtagtctggctatgccaaagtctgatattttaggattcaactt |
47711651 |
T |
|
| Q |
191 |
ttcatcctaagagaatgttacttgctttaag |
221 |
Q |
| |
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||||||| ||||||||||||||||||||||| |
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| T |
47711652 |
ttcatcc-aagagaatgttacttgctttaag |
47711681 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 221
Target Start/End: Original strand, 47758428 - 47758579
Alignment:
| Q |
70 |
aagaaatggaaattaaattcaaatacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaggaattagcctggccatacc-aaat |
168 |
Q |
| |
|
|||| |||||||| | |||| |||||||||||||| ||||||| ||||| ||||||||||||||||| ||| ||| ||| || |||||||| || |||| |
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| T |
47758428 |
aagacatggaaatcatattctaatacttactatgttccaacgattttatttgtatttacttgagtttcatcaacaagaaggagtctggccattccaaaat |
47758527 |
T |
|
| Q |
169 |
ctgatattttaggattcattttttcatcctaagagaatgttacttgctttaag |
221 |
Q |
| |
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|||||||||||||||||| ||||| | |||||||||||||||| |||||||| |
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| T |
47758528 |
ctgatattttaggattcaacttttcgt-ctaagagaatgttactcgctttaag |
47758579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 6497794 - 6497846
Alignment:
| Q |
165 |
aaatctgatattttaggattcattttttcatcctaagagaatgttacttgcttt |
218 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
6497794 |
aaatcagatatcttaggattcatttcttcatc-taagagaatgttacttgcttt |
6497846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 47593132 - 47593100
Alignment:
| Q |
165 |
aaatctgatattttaggattcattttttcatcc |
197 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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| T |
47593132 |
aaatctgatattttaggattcatattttcatcc |
47593100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 11224990 - 11224832
Alignment:
| Q |
63 |
acttaacaagaaatggaaattaaattcaaatacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaggaattagcctggccata |
162 |
Q |
| |
|
||||||||||| |||||||| | |||| |||||||||||||| ||||||| ||||| |||||| |||||||||||||| ||| ||| ||| ||||| ||| |
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| T |
11224990 |
acttaacaagatatggaaatcatattctaatacttactatgttccaacgattttatttgtattaacttgagtttgatcgacaagaagtagtctggcaata |
11224891 |
T |
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| Q |
163 |
cc-aaatctgatattttaggattcattttttcatcctaagagaatgttacttgctttaag |
221 |
Q |
| |
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|| ||||| |||||||||||||||| ||||| ||| ||||||||||||||||||||||| |
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| T |
11224890 |
ccaaaatcagatattttaggattcaacttttcgtcc-aagagaatgttacttgctttaag |
11224832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 28854605 - 28854720
Alignment:
| Q |
91 |
aatacttactatgtcccaacgactttatctgtatttacttgagtttgatccacaggaattagcctggccatacc-aaatctgatattttaggattcattt |
189 |
Q |
| |
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||||||||||| || ||||| || || ||||||| |||| |||||||||||| ||||||| || ||||| || ||||||||||| |||| |||||| | |
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| T |
28854605 |
aatacttactaagttccaacaacactacttgtattttcttgtgtttgatccacaagaattagtcttgccatgccgaaatctgatatcttagcattcatgt |
28854704 |
T |
|
| Q |
190 |
tttcatcctaagagaat |
206 |
Q |
| |
|
|||||| |||||||||| |
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|
| T |
28854705 |
tttcat-ctaagagaat |
28854720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 28828973 - 28829074
Alignment:
| Q |
120 |
tgtatttacttgagtttgatccacaggaattagcctggccatacc-aaatctgatattttaggattcattttttcatcctaagagaatgttacttgcttt |
218 |
Q |
| |
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||||||| |||| |||||||||||| ||||||| || ||||| || ||||||| ||| |||| |||||| | | ||| ||||||||||||| |||||||| |
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| T |
28828973 |
tgtatttgcttgtgtttgatccacaagaattagtcttgccatgccaaaatctgctatcttagcattcatgtctccat-ctaagagaatgttgcttgcttt |
28829071 |
T |
|
| Q |
219 |
aag |
221 |
Q |
| |
|
||| |
|
|
| T |
28829072 |
aag |
28829074 |
T |
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