View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_low_28 (Length: 237)
Name: NF2970_low_28
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 44545690 - 44545506
Alignment:
| Q |
36 |
atttcctttcatcattttcctaacagcatgatgccacatatactttacttgattttcagagaatggcttgacccaacagtcacaagctccattttcaatt |
135 |
Q |
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| T |
44545690 |
atttcctttcatcattttcctaacagcatgatgccacatatactttacttgattttcagagaatggcttgacccaacagtcacaagctccattttcaatt |
44545591 |
T |
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| Q |
136 |
gcattcaatattccagttgttgatccttcagaacacatcgtcactgcacatatatgtaacataaataaattatataatgtctcat |
220 |
Q |
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| T |
44545590 |
gcattcaatattccagttgttgatccttcagaacacatcgtcactgcacatatatgtaacataaataaattatataatgtctcat |
44545506 |
T |
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Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 36 - 207
Target Start/End: Complemental strand, 6524741 - 6524567
Alignment:
| Q |
36 |
atttcctttcatcattttcctaacagcatgatgccacatatactttacttgattttcagagaatggcttgacccaacagtcacaagctccattttcaatt |
135 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
6524741 |
atttcctttcatcattttcctaacagcatgatgccacatatactttacttgattttcagcgaatggcttgacaaaacagtcacaagctccattttcaatg |
6524642 |
T |
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| Q |
136 |
gcattcaatattcc---agttgttgatccttcagaacacatcgtcactgcacatatatgtaacataaataaatta |
207 |
Q |
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| T |
6524641 |
gccttgattattccataatttgttgatccttcagaacacatcgtcactgcacatatatgtaacatatataaatta |
6524567 |
T |
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