View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2970_low_3 (Length: 457)

Name: NF2970_low_3
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2970_low_3
NF2970_low_3
[»] chr6 (6 HSPs)
chr6 (14-88)||(1956779-1956853)
chr6 (373-441)||(1956962-1957030)
chr6 (14-87)||(1941688-1941761)
chr6 (14-136)||(1927578-1927701)
chr6 (383-441)||(1942053-1942111)
chr6 (383-441)||(1928076-1928134)
[»] chr8 (1 HSPs)
chr8 (291-334)||(36774869-36774912)


Alignment Details
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 1956779 - 1956853
Alignment:
Q  14 gagatgaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaaa 88  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1956779 gagaagaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatctaggtaaaaa 1956853  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 373 - 441
Target Start/End: Original strand, 1956962 - 1957030
Alignment:
Q  373 catattatggatttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaag 441  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  1956962 catattatggatttgattaaattttcatgcactttgaaggaggctagaggctgataggtttttcacaag 1957030  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 1941688 - 1941761
Alignment:
Q  14 gagatgaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaa 87  Q
    |||| ||||||||||||||||||||||||||||||| ||||| | || |||||| |||||||||| ||||||||    
T  1941688 gagaagaagataaagggttttgcaattagtgagacagcttttttaatcttccttctcatggcatctaggtaaaa 1941761  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 136
Target Start/End: Original strand, 1927578 - 1927701
Alignment:
Q  14 gagatgaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaaaat-actaaaacttgttttgttttat 112  Q
    |||| ||||||||||||||||||||| ||||| ||| |||||   ||||| ||| |||||||||| ||||||||||| | | | | || |||| ||||||    
T  1927578 gagaagaagataaagggttttgcaataagtgaaacagcttttacaatatttcttctcatggcatctaggtaaaaaataaattacaattattttattttat 1927677  T
Q  113 ttatgtttataccttcataatatt 136  Q
    | |||||| |||||||||||||||    
T  1927678 tgatgtttttaccttcataatatt 1927701  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 1942053 - 1942111
Alignment:
Q  383 atttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaag 441  Q
    ||||||||||||||| |||||||||| ||||||||||||| |||||| |||||||||||    
T  1942053 atttgattgaactttaatgcactttgcaggaggctagagggtgatagatttttcacaag 1942111  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 1928076 - 1928134
Alignment:
Q  383 atttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaag 441  Q
    ||||||||||||||| |||||||||| ||||||||||| | |||||| |||||||||||    
T  1928076 atttgattgaactttaatgcactttgtaggaggctagaaggtgatagatttttcacaag 1928134  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 36774869 - 36774912
Alignment:
Q  291 taatttttaaatcccataagaacaagtgtgatatgcctcagtat 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  36774869 taatttttaaatcccataagaacaagtgtgatatgcctcagtat 36774912  T

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