View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2970_low_30 (Length: 226)
Name: NF2970_low_30
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 52821087 - 52820923
Alignment:
| Q |
47 |
tttcttggagacaataattccaaataattgtttagatacactatactatacgtattctctcttggatcaaaaaatatatatacccgttttgcttgtattc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52821087 |
tttcttggagacaataattccaaataattgtttagatacactatactatacgtattctctcttggatcaaaaaatatatatacccgttttgcttgtattc |
52820988 |
T |
|
| Q |
147 |
ttttccaatctttcacatttctggattgagatgaaagaaagttggaaataatgctagtgttcatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52820987 |
ttttccaatctttcacatttctggattgagatgaaagaaagttggaaataatgctagttttcatc |
52820923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University