View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2970_low_31 (Length: 218)
Name: NF2970_low_31
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 5155332 - 5155513
Alignment:
| Q |
20 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaattaccaataattaccaatacaagttggaaacaaaaacctactccatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5155332 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaattaccaataattaccaatacaagttggaaacaaaaacctactccatg |
5155431 |
T |
|
| Q |
120 |
gaaaatttagaagccaatctatctaaattggagtcaaacaacaaattgaaagaaggaattattaggtttttatatgaggaac |
201 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5155432 |
gaaaatctagaagccaatctatctaaattggagtcaaacaacaaattgaaagaaggaattattaggtttttatatgaggaac |
5155513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 3384603 - 3384717
Alignment:
| Q |
94 |
agttggaaacaaaaacctactccatggaaaatt---tagaagcca----atctatctaaattggagtcaaacaacaaattgaaagaaggaattattaggt |
186 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| | | ||| |||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3384603 |
agttggaaacaaaaacttactccatggaaaatcatctagaatctatctaatccatctaaattggactcaaacaacaaattgaaagaaggaattattaggt |
3384702 |
T |
|
| Q |
187 |
ttttatatgaggaac |
201 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3384703 |
ttttatatgaggaac |
3384717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 8530906 - 8530735
Alignment:
| Q |
20 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaattaccaataattaccaatacaagttggaaacaaaaacctactccatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8530906 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaattaccaata----------caagttggaaacaaaaacctactccatg |
8530817 |
T |
|
| Q |
120 |
gaaaatttagaagccaatctatctaaattggagtcaaacaacaaattgaaagaaggaattattaggtttttatatgaggaac |
201 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
8530816 |
gaaaatctagaagccaatccatctaaattggactcaaacaacatatttaaagaatgaattattaggtttttatatgaggaac |
8530735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 26794791 - 26794899
Alignment:
| Q |
95 |
gttggaaac-aaaaacctactccatggaaaatttagaagccaatctatctaaattggagtcaaacaacaaattgaaa-gaaggaattattaggtttttat |
192 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| ||||||| |||| |||||||||||| |||||||||||| ||||| |||||| |||||||||| ||| |
|
|
| T |
26794791 |
gttggaaaccaaaaacttactccatggaaaatctagaagctaatccatctaaattggactcaaacaacaaactgaaaccaaggaactattaggtttctat |
26794890 |
T |
|
| Q |
193 |
atgaggaac |
201 |
Q |
| |
|
||||||||| |
|
|
| T |
26794891 |
atgaggaac |
26794899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 26794734 - 26794787
Alignment:
| Q |
20 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaat |
73 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||| |
|
|
| T |
26794734 |
atgccaatgtcacaactagtatattggatcccatcaataccagaagccaacaat |
26794787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 40721765 - 40721873
Alignment:
| Q |
95 |
gttggaaac-aaaaacctactccatggaaaatttagaagccaatctatctaaattggagtcaaacaacaaattgaaa-gaaggaattattaggtttttat |
192 |
Q |
| |
|
||||||||| |||||| |||||| |||||||| ||||||| |||| |||||||||||| |||||||||||| | ||| |||||| |||||||||| ||| |
|
|
| T |
40721765 |
gttggaaaccaaaaacttactccgtggaaaatctagaagctaatccatctaaattggactcaaacaacaaactcaaaccaaggaactattaggtttctat |
40721864 |
T |
|
| Q |
193 |
atgaggaac |
201 |
Q |
| |
|
||||||||| |
|
|
| T |
40721865 |
atgaggaac |
40721873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 40721708 - 40721761
Alignment:
| Q |
20 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaat |
73 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||| |
|
|
| T |
40721708 |
atgccaatgtcacaactagtatatcggatcccatcaataccagaagccaacaat |
40721761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University