View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2970_low_5 (Length: 434)
Name: NF2970_low_5
Description: NF2970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2970_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 45893249 - 45892845
Alignment:
| Q |
18 |
gaaatcaatttcgggaacttggttattggaaatgaaatcagttccaactccatatccgggattcttttccggcattgattcaccgtaaaatccttcaaga |
117 |
Q |
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| T |
45893249 |
gaaatcaatttcgggaacttggttattggaaatgaaatcagttccaactccatatccgggattcttttccggcattgattcaccgtaaaatccttcaaga |
45893150 |
T |
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| Q |
118 |
ccaacttctagtaaatggttgctatcaatagacttcacataagcagccatttcactcacccaatcctgtaataaacatagttaattagcaacttctagta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45893149 |
ccaacttctagtaaatggttgctatcaatagacttcacataagcagccatttcactcacccaatcctgtaataaacatagttaattagcaacttctagta |
45893050 |
T |
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| Q |
218 |
aatttatgtagacaactactattgacaagaggtagataataacacaaaaactatgtagggaaataaacctgaaatgatttgccggaagagtcactttgag |
317 |
Q |
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| T |
45893049 |
aatttatgtagacaactactattgacaagaggtagataataacacaaaaactatgtagggaaataaacctgaaatgatttgccggaagagtcactttgag |
45892950 |
T |
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| Q |
318 |
aacgaggttcattcataagctcccatgcaaatatggtcgggtcatccttatatgccaatccagttatagtattatttcttgtcaaaacagcctggacaca |
417 |
Q |
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| T |
45892949 |
aacgaggttcattcataagctcccatgcaaatatggtcgggtcatccttatatgccaatccagttatagtattatttcttgtcaaaacagcctggacaca |
45892850 |
T |
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| Q |
418 |
tttca |
422 |
Q |
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| T |
45892849 |
tttca |
45892845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 318 - 369
Target Start/End: Original strand, 38142098 - 38142149
Alignment:
| Q |
318 |
aacgaggttcattcataagctcccatgcaaatatggtcgggtcatccttata |
369 |
Q |
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| T |
38142098 |
aacgaggttcattcataagctcccatgcaaaaatggttgggtcatccttata |
38142149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 348
Target Start/End: Original strand, 38155251 - 38155281
Alignment:
| Q |
318 |
aacgaggttcattcataagctcccatgcaaa |
348 |
Q |
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| T |
38155251 |
aacgaggttcattcataagctcccatgcaaa |
38155281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 38089718 - 38089755
Alignment:
| Q |
79 |
ttcttttccggcattgattcaccgtaaaatccttcaag |
116 |
Q |
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| T |
38089718 |
ttcttttccggcattgtttcaccataaaatccttcaag |
38089755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 411
Target Start/End: Original strand, 38110510 - 38110603
Alignment:
| Q |
318 |
aacgaggttcattcataagctcccatgcaaatatggtcgggtcatccttatatgccaatccagttatagtattatttcttgtcaaaacagcctg |
411 |
Q |
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|||| ||||| || ||||||||||| || || ||||| || |||||||||||| || ||| ||||||| ||||||||||||| |||||||| |
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| T |
38110510 |
aacgtggttcgtttataagctcccaagcgaaaatggttggatcatccttatataacaccccatttatagtgttatttcttgtcagcacagcctg |
38110603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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