View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2971_low_2 (Length: 334)
Name: NF2971_low_2
Description: NF2971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2971_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 60 - 320
Target Start/End: Complemental strand, 35446355 - 35446094
Alignment:
| Q |
60 |
tgattttgagttatttaggaacgatttttgtatatttaacnnnnnnnnaaggagtatatttaatatttaattatttgtaaggcaagnnnnnnnnaaaaat |
159 |
Q |
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| T |
35446355 |
tgattttgagttaattaggaacgatttttgtatatttaa-atttttttaaggagtatatttaatatttaattatttgtaaggcaagttttttt-aaaaat |
35446258 |
T |
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| Q |
160 |
aaataaaatctgattctannnnnnnnn---accaaaacaattattaaaatccgattctattatattaattaaggcaaggattttgaaaattaaataaatc |
256 |
Q |
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| T |
35446257 |
aaataaaatctgattctattttttttttttaccaaaacaattattaaaatccgattctattatattaattaaggcaagtattttgaaaattaaataaatc |
35446158 |
T |
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| Q |
257 |
agattctattatcttaattaaggcaagttttttaaaaataaatccaaaattactgatttaatct |
320 |
Q |
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| T |
35446157 |
agattctattatcttaattaaggcaagttttttaaaaataaatccaaaattactgatttaatct |
35446094 |
T |
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