View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2972_high_14 (Length: 295)
Name: NF2972_high_14
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2972_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 11490336 - 11490070
Alignment:
| Q |
20 |
aaaattctctataattttctccattgaaatctcaaccatca---atactagagagagtgtggaaattaacttataaagaaaagtagttttatatattaac |
116 |
Q |
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| T |
11490336 |
aaaattctctataattttctctattgaaatctcaaccatcagacataccagagagagtgtggaaattaacttataaagaaaagtagttttatatattaac |
11490237 |
T |
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| Q |
117 |
ggtggagattgaaaattagaaaaactgaaagagaatccaaatcaattattcctaaataagtaaagtacttagaaacttactacgtgtactgtcgccagtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11490236 |
ggtggagattgaaaattagaaaaactgaaagagaatccaaatcaattattcctaaataagtaaagtacttagaaacttactacgtgtactgtcgccagtg |
11490137 |
T |
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| Q |
217 |
gtcactaagaagacacttgacgtaagtcaaaactctggattgtatctatgtatgatttacggttctt |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11490136 |
gtcactaagaagacacttgacgtaagtcaaaactctggattgtatctatgtatgatttacggttctt |
11490070 |
T |
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