View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2972_high_17 (Length: 250)
Name: NF2972_high_17
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2972_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8414589 - 8414358
Alignment:
| Q |
1 |
cataggagatagagtcatgacggatatgatcgtggttacaacaaaatctatattgaatatgagtatcaattatatcaatagtacaatcaacatcctcccg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
8414589 |
cataggagatagagtcatgacggatatgatcgtggttacaacaacaactatattgaatatgagtatcaattatatcaattgtactatcaacatcctcccg |
8414490 |
T |
|
| Q |
101 |
tggaagaaagaccgtatagtatataaaatgttttgaattagttcacacaatagtccatgataaacatgaaacgaaacaatgaaataataaacaacttggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8414489 |
aggaagaaagaccgtatagtatataaaatgttttgaattagttcacacaatagtccatgataaacatgaaacgaaacaatgaaataataaacaacttcgc |
8414390 |
T |
|
| Q |
201 |
atgtctaataggagacatgagtacacaactaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8414389 |
atgtctaataggagacatgagtacacaactaa |
8414358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 27 - 232
Target Start/End: Complemental strand, 8436950 - 8436743
Alignment:
| Q |
27 |
tgatcgtggttacaacaaaatctatattgaatatgagtatcaattatatcaatagtacaatcaacatcctcccgtggaagaaagaccgtatagtatataa |
126 |
Q |
| |
|
|||||||||||||||||| |||| | | ||| ||||||||||||||| ||| | ||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
8436950 |
tgatcgtggttacaacaacttctaaactcaatttgagtatcaattata-caacaatacaatcaacatcctcccgaggaagaaagaccgtaaaaaatataa |
8436852 |
T |
|
| Q |
127 |
aatgttttgaattagttcacacaata---gtccatgataaacatgaaacgaaacaatgaaataataaacaacttggcatgtctaataggagacatgagta |
223 |
Q |
| |
|
||||||||||||| |||| ||||| |||||||||||||||| || ||||||||||||||||||||||||| |||| | |||||||| ||||||||| |
|
|
| T |
8436851 |
gatgttttgaattaattcatgcaatattagtccatgataaacatgcaaagaaacaatgaaataataaacaacttagcatatgtaataggacacatgagta |
8436752 |
T |
|
| Q |
224 |
cacaactaa |
232 |
Q |
| |
|
||||||||| |
|
|
| T |
8436751 |
cacaactaa |
8436743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 31850562 - 31850614
Alignment:
| Q |
152 |
agtccatgataaacatgaaacgaaacaatgaaataataaacaacttggcatgt |
204 |
Q |
| |
|
||||||||||||||||| || |||||||||||| ||||||||| ||||||||| |
|
|
| T |
31850562 |
agtccatgataaacatgcaaagaaacaatgaaagaataaacaagttggcatgt |
31850614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 31850437 - 31850486
Alignment:
| Q |
27 |
tgatcgtggttacaacaaaatctatattgaatatgagtatcaattatatc |
76 |
Q |
| |
|
||||| |||||||||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
31850437 |
tgatcatggttacaacaacttctatactcaatatgagtatcaattatatc |
31850486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University