View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2972_high_19 (Length: 247)

Name: NF2972_high_19
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2972_high_19
NF2972_high_19
[»] chr5 (5 HSPs)
chr5 (12-130)||(43383170-43383282)
chr5 (158-230)||(43383301-43383373)
chr5 (159-230)||(25870023-25870094)
chr5 (12-49)||(25869933-25869970)
chr5 (102-130)||(25869981-25870009)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 43383170 - 43383282
Alignment:
Q  12 gagatgaaaggtggagataaaaattggtccgatgatcatagtagtggtgatcaatacaggatgaaagatgattctgttaatgttactggtaagaagaagc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      || |||||||||||||||||||     
T  43383170 gagatgaaaggtggagataaaaattggtccgatgatcatagtagtggtgatcaatacaggatgaaagatga------tactgttactggtaagaagaaga 43383263  T
Q  112 gtaaggaattgggtgggga 130  Q
    |||||||||||||||||||    
T  43383264 gtaaggaattgggtgggga 43383282  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 158 - 230
Target Start/End: Original strand, 43383301 - 43383373
Alignment:
Q  158 gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43383301 gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatg 43383373  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 25870023 - 25870094
Alignment:
Q  159 aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25870023 aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatg 25870094  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 25869933 - 25869970
Alignment:
Q  12 gagatgaaaggtggagataaaaattggtccgatgatca 49  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25869933 gagatgaaaggtggagataaaaattggtccgatgatca 25869970  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 130
Target Start/End: Original strand, 25869981 - 25870009
Alignment:
Q  102 aagaagaagcgtaaggaattgggtgggga 130  Q
    |||||||||||||||||||||||||||||    
T  25869981 aagaagaagcgtaaggaattgggtgggga 25870009  T

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