View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2972_high_23 (Length: 227)

Name: NF2972_high_23
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2972_high_23
NF2972_high_23
[»] chr2 (1 HSPs)
chr2 (5-227)||(8415166-8415388)
[»] scaffold0113 (1 HSPs)
scaffold0113 (132-217)||(21372-21456)
[»] chr4 (3 HSPs)
chr4 (164-227)||(12212084-12212147)
chr4 (140-214)||(22784112-22784185)
chr4 (182-215)||(23083851-23083884)
[»] chr3 (1 HSPs)
chr3 (140-227)||(32460158-32460244)
[»] scaffold0450 (1 HSPs)
scaffold0450 (157-227)||(12062-12132)
[»] chr1 (1 HSPs)
chr1 (145-214)||(2995632-2995700)
[»] chr6 (2 HSPs)
chr6 (179-227)||(23665609-23665657)
chr6 (157-217)||(25007144-25007204)
[»] chr5 (1 HSPs)
chr5 (179-215)||(27169827-27169863)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 8415388 - 8415166
Alignment:
Q  5 gaggaatcaacttcaacattaaatctcttttcttcaatcctctctattattgagattaggtctaattgttatggttctgatgtagatacttgatctggct 104  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8415388 gaggaatcaacttcaacattaaatctcttttcttcaatcatctctattattgagattaagtctaattgttatggttctgatgtagatacttgatctggct 8415289  T
Q  105 agttatatagaatataataatcgctattttatttttgttcttaatgtttttctctgaagtgcaatccaaaaataatattttgatttagaaagtgcgagac 204  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  8415288 agttatatagaatataataatctctattttatttttgttcttaatgtttttctctggcgtgcaatccaaaaataatattttgatttagaaagtgcgagac 8415189  T
Q  205 atcgactttttatttacgggatc 227  Q
     ||||||||||||||||||||||    
T  8415188 gtcgactttttatttacgggatc 8415166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 217
Target Start/End: Complemental strand, 21456 - 21372
Alignment:
Q  132 tttatttttgttcttaatgtttttctctgaagtgcaatccaaaaataatattttgatttagaaagtgcgagacatcgactttttat 217  Q
    ||||||||||||||||||| |||| | |||  |||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||    
T  21456 tttatttttgttcttaatgctttttt-tgatatgcaatccaaaaatgatattttgatttagaaagtgcaagacattgacttcttat 21372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 12212084 - 12212147
Alignment:
Q  164 tgcaatccaaaaataatattttgatttagaaagtgcgagacatcgactttttatttacgggatc 227  Q
    |||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| | ||||||    
T  12212084 tgcaatccaaaaatgatattttgatttagaaagtgtgagtcatcgactttttattgaagggatc 12212147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 22784112 - 22784185
Alignment:
Q  140 tgttcttaatgtttttctctgaagtgcaatccaaaaataatattttgatttagaaagtgcgagacatcgactttt 214  Q
    ||||||||||| ||||||| || ||| ||||  ||||| ||||||||||||||||||||  ||||||| ||||||    
T  22784112 tgttcttaatgcttttctc-gacgtgtaatctgaaaatgatattttgatttagaaagtgttagacatcaactttt 22784185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 23083884 - 23083851
Alignment:
Q  182 ttttgatttagaaagtgcgagacatcgacttttt 215  Q
    ||||||||||||||||| ||||||||||||||||    
T  23083884 ttttgatttagaaagtgtgagacatcgacttttt 23083851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 32460158 - 32460244
Alignment:
Q  140 tgttcttaatgtttttctctgaagtgcaatccaaaaataatattttgatttagaaagtgcgagacatcgactttttatttacgggatc 227  Q
    |||||||||||||||| || ||  |||||| | ||||| ||||||||||||||||||||| ||||||| ||||||||| || ||||||    
T  32460158 tgttcttaatgttttt-tccgacatgcaattcgaaaatgatattttgatttagaaagtgcaagacatcaactttttatctaagggatc 32460244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 12132 - 12062
Alignment:
Q  157 tctgaagtgcaatccaaaaataatattttgatttagaaagtgcgagacatcgactttttatttacgggatc 227  Q
    ||||| ||||| ||||||  | ||||||| || ||||||||| |||||||||||||||||| || ||||||    
T  12132 tctgacgtgcactccaaagttgatattttaatgtagaaagtgagagacatcgactttttatctaagggatc 12062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 2995632 - 2995700
Alignment:
Q  145 ttaatgtttttctctgaagtgcaatccaaaaataatattttgatttagaaagtgcgagacatcgactttt 214  Q
    ||||||||||| || || ||||||| ||||||||||||||||| |||  ||||||  |||||||||||||    
T  2995632 ttaatgttttt-tccgacgtgcaattcaaaaataatattttgacttacgaagtgctggacatcgactttt 2995700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 23665609 - 23665657
Alignment:
Q  179 atattttgatttagaaagtgcgagacatcgactttttatttacgggatc 227  Q
    ||||||| || ||||||||| |||||||||||||||||| || ||||||    
T  23665609 atattttaatgtagaaagtgagagacatcgactttttatctaagggatc 23665657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 25007144 - 25007204
Alignment:
Q  157 tctgaagtgcaatccaaaaataatattttgatttagaaagtgcgagacatcgactttttat 217  Q
    ||||| ||||||||||||| | |   ||| |||||||||||| ||||||||||||||||||    
T  25007144 tctgacgtgcaatccaaaattgaacatttaatttagaaagtgtgagacatcgactttttat 25007204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 27169863 - 27169827
Alignment:
Q  179 atattttgatttagaaagtgcgagacatcgacttttt 215  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  27169863 atattttgatttagaaattgcgagacatagacttttt 27169827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University