View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2972_high_3 (Length: 512)
Name: NF2972_high_3
Description: NF2972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2972_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 67 - 502
Target Start/End: Original strand, 21657962 - 21658385
Alignment:
| Q |
67 |
tacatacaaatttagaataaactaaattcaatgataaacccaccaggccgaaacaaaagctgtatactactacgtacaatgatttctttcgaactaaaac |
166 |
Q |
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| T |
21657962 |
tacatacaaatttagaatatactaaattcaaagataaacccaccaggccgaaacaaaagctgtatactactacgtacaatgatttctttcgaact----- |
21658056 |
T |
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| Q |
167 |
taaactaaaccctccagaaatctgttaatcaat-aatactaatataatataatagtgtattatctctatcaattgatgcatatatttgaacaatttttct |
265 |
Q |
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| T |
21658057 |
------aaaccctccataaatctgttaatcaatcaataata--ctaatataatagtgtattatctctatcaattgatgcataaatttgaacaatttttct |
21658148 |
T |
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| Q |
266 |
aattcctactatctaaaaggggtaagattcatttttaacataagggaaggagatcaagatatttattcctcaacaacagcatcattgtccttaaagacat |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21658149 |
aattcctactatctaaaaggggtaagattcatttttaacataagggaaggagatcaagatatttattcctcaacaacagcatcattgtcgttaaagacat |
21658248 |
T |
|
| Q |
366 |
tatttaaagttgtcacagtcttgtcttttaagacatacaatgaaatgatgaatttacttccaacatcatggtagttgcccttcaccatttttcattccca |
465 |
Q |
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| T |
21658249 |
tatttaaagttgtcacagtcttgtcttttaagacatacaatgaaatgatgaatttacttccaacatcatgctagttgcccttcaccatttttcattccca |
21658348 |
T |
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| Q |
466 |
ttttcataaatcataaaaccccattttcaacattcat |
502 |
Q |
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| T |
21658349 |
ttttcataaatcataaaaccccattttcaacattcat |
21658385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 386
Target Start/End: Original strand, 21663057 - 21663166
Alignment:
| Q |
275 |
tatctaaaaggggtaagattcatttttaacataagggaaggagatcaagatatttattcctcaacaacagcatcattgtccttaaagacattatttaaag |
374 |
Q |
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| T |
21663057 |
tatctaaaaagggtaggatccatttttgacataagg--aggagatcaagatctttattccacaacaacattatttttgtcgttaaagacattattcaaag |
21663154 |
T |
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| Q |
375 |
ttgtcacagtct |
386 |
Q |
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| T |
21663155 |
cagtcacagtct |
21663166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 386
Target Start/End: Original strand, 21671821 - 21671930
Alignment:
| Q |
275 |
tatctaaaaggggtaagattcatttttaacataagggaaggagatcaagatatttattcctcaacaacagcatcattgtccttaaagacattatttaaag |
374 |
Q |
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| T |
21671821 |
tatctaaaaagggtaggatccatttttgacataagg--aggagatcaagatctttattccacaacaacattatttttgtcgttaaagacattattcaaag |
21671918 |
T |
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| Q |
375 |
ttgtcacagtct |
386 |
Q |
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|||||||||| |
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| T |
21671919 |
cagtcacagtct |
21671930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 21657913 - 21657941
Alignment:
| Q |
18 |
gcaatatctacgtatcactgtccaatttt |
46 |
Q |
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| T |
21657913 |
gcaatatctacgtatcactgtccaatttt |
21657941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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